\documentclass[a4paper,12pt,dvips]{article}
%amsmath
\usepackage{amssymb}
\usepackage{amsmath}
\usepackage{amscd}
\usepackage{latexsym}
\usepackage{epsfig}
\usepackage{multirow}
\usepackage{color}
\usepackage{dsfont}
%\usepackage[bf,footnotesize]{caption}
%\setlength{\captionmargin}{15pt}
\usepackage{hyperref}
\usepackage{subfigure}
\usepackage{pifont}
\usepackage{algorithm}
\usepackage{algorithmic}

%\setlength{\parindent}{0pt}
% Absatzabstand
\setlength{\parskip}{3pt plus 3pt}
% Hoehe der Kopfzeilen
%\setlength{\headheight}{26pt}

\input{command}

\date{\today}
\title{tmLQCD package documentation}

\begin{document}
%\begin{titlepage}
\begin{center}
  {\Large\bf tmLQCD Package Documentation}\\
\end{center}

\tableofcontents

\begin{flushright}
  Copyright \textcopyright\ 2009 Carsten Urbach
\end{flushright}

\section{Theoretical Background}

\myinput{basis}

\section{Installation and Usage}

\myinput{install}
\myinput{input}
\myinput{output}
\myinput{gensources}

\section{Implementation}

\myinput{overview}
\myinput{components}
\myinput{test}

%\myinput{eo_pre}
%\myinput{martins-trick}
%\myinput{deflation}
%\myinput{c-code}
%\myinput{integrationschemes}

%\myinput{parallel}
%\myinput{operator}
%\myinput{online}

\section{File Formats and IO}
\myinput{prop_format.tex}

\section{Interfaces to external QCD libraries}
\myinput{quda.tex}

\clearpage
\bibliographystyle{h-physrev5}
\bibliography{bibliography}
\clearpage

\begin{appendix}
  \section{$\gamma$  and Pauli  Matrices}
  \myinput{gamma}

  \section{Initialising the PHMC}
  \myinput{root}
  \section{Even/Odd Preconditioning}
  \myinput{eo_pre}
  \myinput{martins-trick}
  \myinput{rational}

  \section{Deflation}
  \myinput{deflation}
\end{appendix}


\end{document}

%%% Local Variables: 
%%% mode: latex
%%% TeX-master: "main"
%%% End: 
