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job_juwels-booster_small_benchmark_run_to_test_more_complex_Earth.slurm 2.89 KiB
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add juwels booster system
Cedric Jourdain committed
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#!/bin/bash
#SBATCH -J specfem_gpu_small_benchmark_run_to_test_more_complex_Earth
#SBATCH --account=prpb85
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=24
#SBATCH --cpus-per-task=2
#SBATCH --time=01:59:59
#SBATCH --output specfem_gpu_small_benchmark_run_to_test_more_complex_Earth-%j.out
#SBATCH --exclusive
#SBATCH -p booster
#SBATCH --gres=gpu:4

#set -e
source ../env/env_juwels-booster
grep "^[^#;]" ../env/env_juwels-booster
cat job_juwels-booster_small_benchmark_run_to_test_more_complex_Earth.slurm

cd $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth
export OMPI_MCA_pml=ucx
export OMPI_MCA_btl="^uct,tcp,openib,vader" 
export CUDA_VISIBLE_DEVICES=0,1,2,3
#export OMP_NUM_THREADS=1

sed -i s/"GPU_MODE                        = .false."/"GPU_MODE                        = .true."/g  $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/DATA/Par_file
sed -i s/"GPU_DEVICE                      = Tesla"/"GPU_DEVICE                      = *"/g  $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/DATA/Par_file
sed -i s/"configure  --enable-openmp"/"configure --build=ppc64 --with-cuda=cuda8 "/g $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/run_this_example.sh
sed -i s/"mpirun -np"/"srun -n"/g $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/run_mesher_solver.bash
#taskset -a -p $PPID

time ./run_this_example.sh

echo "=========="
echo "config.log"
echo "=========="
cat $install_dir/specfem3d_globe/config.log
echo "========"
echo "make.log"
echo "========"
cat $install_dir/specfem3d_globe/make.log

echo
echo "running seismogram comparisons:"
echo

cd $install_dir/specfem3d_globe/
# uncompress seismograms
if [ -e EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES_reference_OK/II.AAK.MXE.sem.ascii.bz2 ]; then
  echo
  echo "unzipping references..."
  echo
  mkdir OUTPUT_FILES_reference_OK/
  bunzip2 EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES_reference_OK/*.bz2
  echo
  echo
fi

#wget https://repo.anaconda.com/miniconda/Miniconda3-py37_4.10.3-Linux-x86_64.sh
#sh /ceph/hpc/home/eucedricj/Miniconda3-py37_4.10.3-Linux-x86_64.sh
#source miniconda3/bin/activate
#conda create --name python2 python=2.7
# compares seismograms by plotting correlations
./utils/compare_seismogram_correlations.py EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES/ EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES_reference_OK/

echo
echo "done"
ls -lrth $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES/output_*.txt
cat $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES/output_mesher.txt
cat $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES/output_solver.txt