From 867c64400b6f5d25c65b7807bb5c3ddb9ca7d303 Mon Sep 17 00:00:00 2001 From: Jourdain Date: Thu, 25 Nov 2021 16:54:36 +0100 Subject: [PATCH] Add test case A scalability test template --- .../job_juwels_test_case_A_NEX_XI.slurm | 81 +++++++++++++++++++ 1 file changed, 81 insertions(+) create mode 100644 specfem3d/job_script/job_juwels_test_case_A_NEX_XI.slurm diff --git a/specfem3d/job_script/job_juwels_test_case_A_NEX_XI.slurm b/specfem3d/job_script/job_juwels_test_case_A_NEX_XI.slurm new file mode 100644 index 0000000..f35bb36 --- /dev/null +++ b/specfem3d/job_script/job_juwels_test_case_A_NEX_XI.slurm @@ -0,0 +1,81 @@ +#!/bin/bash -x +#SBATCH -J Test_case_A +#SBATCH --account=prpb85 +#SBATCH --nodes=24 +#SBATCH --ntasks-per-node=4 +#SBATCH --cpus-per-task=12 +#SBATCH --time=00:59:59 +#SBATCH --partition=batch +#SBATCH --output=specfem_%x_NEX_XI-%j.output +##SBATCH --acctg-freq=task=1 +set -e + +source ../env/env_juwels +grep "^[^#;]" ../env/env_juwels +cat job_juwels_test_case_A_NEX_XI.slurm +echo "==========" +echo "config.log" +echo "==========" +cat $install_dir/TestCaseA/specfem3d_globe/config.log +echo "========" +echo "make.log" +echo "========" +cat $install_dir/TestCaseA/specfem3d_globe/make.log +cd $install_dir/TestCaseA/specfem3d_globe +#export I_MPI_DEBUG=5 +export I_MPI_PMI_VALUE_LENGTH_MAX=1800 + +#Make sure that OMP_NUM_THREADS / KMP_HW_SUBSET = cpus-per-task +export KMP_HW_SUBSET=1T +export OMP_NUM_THREADS=${SLURM_CPUS_PER_TASK} +export KMP_AFFINITY=granularity=core,compact +export FORT_BUFFERED=true + +ulimit -s unlimited + +MESHER_EXE=./bin/xmeshfem3D +SOLVER_EXE=./bin/xspecfem3D + +# backup files used for this simulation +cp DATA/Par_file OUTPUT_FILES/ +cp DATA/STATIONS OUTPUT_FILES/ +cp DATA/CMTSOLUTION OUTPUT_FILES/ + +## +## mesh generation +## +sleep 2 + +echo +echo `date` +echo "starting MPI mesher" +echo + +MPI_PROCESS=` echo "$SLURM_NNODES*$SLURM_NTASKS_PER_NODE" | bc -l` +echo "SLURM_NTASKS_PER_NODE = " $SLURM_NTASKS_PER_NODE +echo "SLURM_CPUS_PER_TASKS = " $SLURM_CPUS_PER_TASK +echo "SLURM_NNODES=" $SLURM_NNODES +echo "MPI_PROCESS $MPI_PROCESS" +echo "OMP_NUM_THREADS=$OMP_NUM_THREADS" + +time srun -n ${MPI_PROCESS} ${MESHER_EXE} +echo " mesher done: `date`" +echo + +## +## forward simulation +## +sleep 2 + +echo +echo `date` +echo starting run in current directory $PWD +echo +time srun -n ${MPI_PROCESS} ${SOLVER_EXE} +echo "=====================" +echo `date` +ls -lrth $install_dir/TestCaseA/specfem3d_globe/OUTPUT_FILES/output_*.txt +cat $install_dir/TestCaseA/specfem3d_globe/OUTPUT_FILES/output_mesher.txt +cat $install_dir/TestCaseA/specfem3d_globe/OUTPUT_FILES/output_solver.txt +cd - +mv specfem_${SLURM_JOB_NAME}_NEX_XI-$SLURM_JOBID.output specfem_${SLURM_JOB_NAME}_NEX_XI-$NEX_XI-$SLURM_JOBID.output -- GitLab