diff --git a/README.md b/README.md index d1fe455f2dd8a9f9daf03afe903d32bc7dd43709..8c7f6d0e667aecdb978122cdf2867d9f2847614a 100644 --- a/README.md +++ b/README.md @@ -47,10 +47,10 @@ The Alya System is a Computational Mechanics code capable of solving different p - Web site: https://www.bsc.es/computer-applications/alya-system - Code download: http://www.prace-ri.eu/UEABS/ALYA/1.1/alya3226.tar.gz -- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/alya/ALYA_Build_README.txt +- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/alya/ALYA_Build_README.txt - Test Case A: http://www.prace-ri.eu/UEABS/ALYA/1.3/ALYA_TestCaseA.tar.bz2 - Test Case B: http://www.prace-ri.eu/UEABS/ALYA/1.3/ALYA_TestCaseB.tar.bz2 -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/alya/ALYA_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/alya/ALYA_Run_README.txt # Code_Saturne @@ -61,10 +61,10 @@ Code_Saturne® is based on a co-located finite volume approach that can hand - Web site: http://code-saturne.org - Code download: http://code-saturne.org/cms/download or http://www.prace-ri.eu/UEABS/Code_Saturne/1.3/Code_Saturne-4.0.6_UEABS.tar.gz - Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license. -- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf +- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf - Test Case A: http://www.prace-ri.eu/UEABS/Code_Saturne/1.3/Code_Saturne_TestCaseA.tar.gz - Test Case B: http://www.prace-ri.eu/UEABS/Code_Saturne/1.3/Code_Saturne_TestCaseB.tar.gz -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf # CP2K @@ -74,10 +74,10 @@ CP2K provides state-of-the-art methods for efficient and accurate atomistic simu - Web site: https://www.cp2k.org/ - Code download: https://www.cp2k.org/download -- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/cp2k/CP2K_Build_README.txt +- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/cp2k/CP2K_Build_README.txt - Test Case A: http://www.prace-ri.eu/UEABS/CP2K/1.3/CP2K_TestCaseA.tar.gz - Test Case B: http://www.prace-ri.eu/UEABS/CP2K/1.3/CP2K_TestCaseB.tar.gz -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/cp2k/CP2K_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/cp2k/CP2K_Run_README.txt # GADGET @@ -86,9 +86,9 @@ GADGET is a freely available code for cosmological N-body/SPH simulations on mas - Web site: http://www.mpa-garching.mpg.de/gadget/ - Code download: http://www.prace-ri.eu/UEABS/GADGET/gadget3_Source.tar.gz - Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license. -- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gadget/gadget3_Build_README.txt +- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gadget/gadget3_Build_README.txt - Test Case A: http://www.prace-ri.eu/UEABS/GADGET/gadget3_TestCaseA.tar.gz -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gadget/gadget3_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gadget/gadget3_Run_README.txt # GENE @@ -103,7 +103,7 @@ The GENE code is written in Fortran 90 and C and is parallelized with pure MPI. - Build instructions: included with code download - Test Case A: included with code download - Test Case B: included with code download -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gene/GENE_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gene/GENE_Run_README.txt # GPAW @@ -118,9 +118,9 @@ The program offers several parallelization levels. The most basic parallelizatio - Web site: https://wiki.fysik.dtu.dk/gpaw/ - Code download: https://gitlab.com/gpaw/gpaw -- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gpaw/GPAW_Build_README.txt +- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gpaw/GPAW_Build_README.txt - Test Case A: http://www.prace-ri.eu/UEABS/GPAW/GPAW_benchmark.tar.gz -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gpaw/GPAW_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gpaw/GPAW_Run_README.txt # GROMACS @@ -151,7 +151,7 @@ Instructions: - Code download: http://www.gromacs.org/Downloads The UEABS benchmark cases require the use of 5.1.x or newer branch: the latest 2016 version is suggested. - Test Case A: http://www.prace-ri.eu/UEABS/GROMACS/1.2/GROMACS_TestCaseA.tar.gz - Test Case B: http://www.prace-ri.eu/UEABS/GROMACS/1.2/GROMACS_TestCaseB.tar.gz -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gromacs/GROMACS_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gromacs/GROMACS_Run_README.txt # NAMD @@ -166,11 +166,11 @@ Deployment areas of NAMD include pharmaceutical research by academic and industr NAMD is written in C++ and parallelised using Charm++ parallel objects, which are implemented on top of MPI. - Web site: http://www.ks.uiuc.edu/Research/namd/ -- Code download: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/namd/NAMD_Download_README.txt -- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/namd/NAMD_Build_README.txt +- Code download: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/namd/NAMD_Download_README.txt +- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/namd/NAMD_Build_README.txt - Test Case A: http://www.prace-ri.eu/UEABS/NAMD/1.2/NAMD_TestCaseA.tar.gz - Test Case B: http://www.prace-ri.eu/UEABS/NAMD/1.2/NAMD_TestCaseB.tar.gz -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/namd/NAMD_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/namd/NAMD_Run_README.txt # NEMO @@ -189,9 +189,9 @@ NEMO is used by a large community: 240 projects in 27 countries (14 in Europe, 1 - Web site: http://www.nemo-ocean.eu/ - Code download: http://www.prace-ri.eu/UEABS/NEMO/NEMO_Source.tar.gz - Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license. -- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/nemo/NEMO_Build_README.txt +- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/nemo/NEMO_Build_README.txt - Test Case A: http://www.prace-ri.eu/UEABS/NEMO/NEMO_TestCaseA.tar.gz -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/nemo/NEMO_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/nemo/NEMO_Run_README.txt # QCD @@ -210,9 +210,9 @@ Kernel D consists of the core matrix-vector multiplication routine for standard Kernel E consists of a full conjugate gradient solution using Wilson fermions. Lattice size is 643 x 3. - Code download: http://www.prace-ri.eu/UEABS/QCD/1.3/QCD_Source_TestCaseA.tar.gz -- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/qcd/QCD_Build_README.txt +- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/qcd/QCD_Build_README.txt - Test Case A: included with source download -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/qcd/QCD_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/qcd/QCD_Run_README.txt # Quantum Espresso @@ -226,7 +226,7 @@ QUANTUM ESPRESSO is written mostly in Fortran90, and parallelised using MPI and - Build instructions: http://www.quantum-espresso.org/wp-content/uploads/Doc/user_guide/ - Test Case A: http://www.prace-ri.eu/UEABS/Quantum_Espresso/QuantumEspresso_TestCaseA.tar.gz - Test Case B: http://www.prace-ri.eu/UEABS/Quantum_Espresso/QuantumEspresso_TestCaseB.tar.gz -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/quantum_espresso/QE-guide.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/quantum_espresso/QE-guide.txt # SPECFEM3D @@ -241,7 +241,7 @@ In many geological models in the context of seismic wave propagation studies (ex - Build instructions: http://www.geodynamics.org/wsvn/cig/seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf?op=file&rev=0&sc=0 - Test Case A: http://www.prace-ri.eu/UEABS/SPECFEM3D/SPECFEM3D_TestCaseA.tar.gz - Test Case B: http://www.prace-ri.eu/UEABS/SPECFEM3D/SPECFEM3D_TestCaseA.tar.gz -- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/specfem3d/SPECFEM3D_Run_README.txt +- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/specfem3d/SPECFEM3D_Run_README.txt