#!/bin/bash #SBATCH -J Test_case_A #SBATCH --nodes=12 #SBATCH --ntasks-per-node=8 #SBATCH --cpus-per-task=6 #SBATCH --time=01:00:00 #SBATCH --no-requeue #SBATCH --account=pn73ve #SBATCH --partition=micro #general # insert test, micro, general, large or fat #SBATCH -o ./%x-12Nodes-6OMP-%j.out #set -e source ../env/env_supermuc-ng cat ../env/env_supermuc-ng grep "^[^#;]" ../env/env_supermuc-ng cat job_supermuc-ng_test_case_A.slurm echo "==========" echo "config.log" echo "==========" cat $install_dir/TestCaseA/specfem3d_globe/config.log echo "========" echo "make.log" echo "========" cat $install_dir/TestCaseA/specfem3d_globe/make.log echo "========" echo "Par_file" echo "========" cat $install_dir/TestCaseA/specfem3d_globe/DATA/Par_file module load slurm_setup cd $install_dir/TestCaseA/specfem3d_globe #Make sure that OMP_NUM_THREADS / KMP_HW_SUBSET = cpus-per-task export KMP_HW_SUBSET=1T export OMP_NUM_THREADS=${SLURM_CPUS_PER_TASK} #export KMP_AFFINITY=granularity=core,compact export FORT_BUFFERED=true export FORT_BLOCKSIZE=16777216 ulimit -s unlimited export LIBRARY_PATH=$LD_LIBRARY_PATH echo "LD_LIBRARY_PATH = $LD_LIBRARY_PATH" MESHER_EXE=./bin/xmeshfem3D SOLVER_EXE=./bin/xspecfem3D # backup files used for this simulation cp DATA/Par_file OUTPUT_FILES/ cp DATA/STATIONS OUTPUT_FILES/ cp DATA/CMTSOLUTION OUTPUT_FILES/ ## ## mesh generation ## sleep 2 echo echo `date` echo "starting MPI mesher" echo MPI_PROCESS=` echo "$SLURM_NNODES*$SLURM_NTASKS_PER_NODE" | bc -l` echo "SLURM_NTASKS_PER_NODE = " $SLURM_NTASKS_PER_NODE echo "SLURM_CPUS_PER_TASKS = " $SLURM_CPUS_PER_TASK echo "SLURM_NNODES=" $SLURM_NNODES echo "MPI_PROCESS $MPI_PROCESS" echo "OMP_NUM_THREADS=$OMP_NUM_THREADS" time mpiexec -np ${MPI_PROCESS} ${MESHER_EXE} echo " mesher done: `date`" echo ## ## forward simulation ## sleep 2 echo echo `date` echo starting run in current directory $PWD echo time mpiexec -np ${MPI_PROCESS} ${SOLVER_EXE} echo "finished successfully" echo "=====================" echo `date` ls -lrth $install_dir/TestCaseA/specfem3d_globe/OUTPUT_FILES/output_*.txt cat $install_dir/TestCaseA/specfem3d_globe/OUTPUT_FILES/output_mesher.txt cat $install_dir/TestCaseA/specfem3d_globe/OUTPUT_FILES/output_solver.txt