mmio.h

/* 
*   Matrix Market I/O library for ANSI C
*
*   See http://math.nist.gov/MatrixMarket for details.
*
*
*/

#ifndef MM_IO_H
#define MM_IO_H

#define MM_MAX_LINE_LENGTH 1025
#define MatrixMarketBanner "%%MatrixMarket"
#define MM_MAX_TOKEN_LENGTH 64

typedef char MM_typecode[4];

char *mm_typecode_to_str(MM_typecode matcode);

int mm_read_banner(FILE *f, MM_typecode *matcode);
int mm_read_mtx_crd_size(FILE *f, int *M, int *N, int *nz);
int mm_read_mtx_array_size(FILE *f, int *M, int *N);

int mm_write_banner(FILE *f, MM_typecode matcode);
int mm_write_mtx_crd_size(FILE *f, int M, int N, int nz);
int mm_write_mtx_array_size(FILE *f, int M, int N);


/********************* MM_typecode query fucntions ***************************/

#define mm_is_matrix(typecode)	((typecode)[0]=='M')

#define mm_is_sparse(typecode)	((typecode)[1]=='C')
#define mm_is_coordinate(typecode)((typecode)[1]=='C')
#define mm_is_dense(typecode)	((typecode)[1]=='A')
#define mm_is_array(typecode)	((typecode)[1]=='A')

#define mm_is_complex(typecode)	((typecode)[2]=='C')
#define mm_is_real(typecode)		((typecode)[2]=='R')
#define mm_is_pattern(typecode)	((typecode)[2]=='P')
#define mm_is_integer(typecode) ((typecode)[2]=='I')

#define mm_is_symmetric(typecode)((typecode)[3]=='S')
#define mm_is_general(typecode)	((typecode)[3]=='G')
#define mm_is_skew(typecode)	((typecode)[3]=='K')
#define mm_is_hermitian(typecode)((typecode)[3]=='H')

int mm_is_valid(MM_typecode matcode);		/* too complex for a macro */


/********************* MM_typecode modify fucntions ***************************/

#define mm_set_matrix(typecode)	((*typecode)[0]='M')
#define mm_set_coordinate(typecode)	((*typecode)[1]='C')
#define mm_set_array(typecode)	((*typecode)[1]='A')
#define mm_set_dense(typecode)	mm_set_array(typecode)
#define mm_set_sparse(typecode)	mm_set_coordinate(typecode)

#define mm_set_complex(typecode)((*typecode)[2]='C')
#define mm_set_real(typecode)	((*typecode)[2]='R')
#define mm_set_pattern(typecode)((*typecode)[2]='P')
#define mm_set_integer(typecode)((*typecode)[2]='I')


#define mm_set_symmetric(typecode)((*typecode)[3]='S')
#define mm_set_general(typecode)((*typecode)[3]='G')
#define mm_set_skew(typecode)	((*typecode)[3]='K')
#define mm_set_hermitian(typecode)((*typecode)[3]='H')

#define mm_clear_typecode(typecode) ((*typecode)[0]=(*typecode)[1]= \
									(*typecode)[2]=' ',(*typecode)[3]='G')

#define mm_initialize_typecode(typecode) mm_clear_typecode(typecode)


/********************* Matrix Market error codes ***************************/


#define MM_COULD_NOT_READ_FILE	11
#define MM_PREMATURE_EOF		12
#define MM_NOT_MTX				13
#define MM_NO_HEADER			14
#define MM_UNSUPPORTED_TYPE		15
#define MM_LINE_TOO_LONG		16
#define MM_COULD_NOT_WRITE_FILE	17


/******************** Matrix Market internal definitions ********************

   MM_matrix_typecode: 4-character sequence

				    ojbect 		sparse/   	data        storage 
						  		dense     	type        scheme

   string position:	 [0]        [1]			[2]         [3]

   Matrix typecode:  M(atrix)  C(oord)		R(eal)   	G(eneral)
						        A(array)	C(omplex)   H(ermitian)
											P(attern)   S(ymmetric)
								    		I(nteger)	K(kew)

 ***********************************************************************/

#define MM_MTX_STR		"matrix"
#define MM_ARRAY_STR	"array"
#define MM_DENSE_STR	"array"
#define MM_COORDINATE_STR "coordinate" 
#define MM_SPARSE_STR	"coordinate"
#define MM_COMPLEX_STR	"complex"
#define MM_REAL_STR		"real"
#define MM_INT_STR		"integer"
#define MM_GENERAL_STR  "general"
#define MM_SYMM_STR		"symmetric"
#define MM_HERM_STR		"hermitian"
#define MM_SKEW_STR		"skew-symmetric"
#define MM_PATTERN_STR  "pattern"


/*  high level routines */

int mm_write_mtx_crd(char fname[], int M, int N, int nz, int I[], int J[],
		 double val[], MM_typecode matcode);
int mm_read_mtx_crd_data(FILE *f, int M, int N, int nz, int I[], int J[],
		double val[], MM_typecode matcode);
int mm_read_mtx_crd_entry(FILE *f, int *I, int *J, double *real, double *img,
			MM_typecode matcode);

int mm_read_unsymmetric_sparse(const char *fname, int *M_, int *N_, int *nz_,
                double **val_, int **I_, int **J_);

#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include <ctype.h>

int mm_read_unsymmetric_sparse(const char *fname, int *M_, int *N_, int *nz_,
                double **val_, int **I_, int **J_)
{
    FILE *f;
    MM_typecode matcode;
    int M, N, nz;
    int i;
    double *val;
    int *I, *J;
 
    if ((f = fopen(fname, "r")) == NULL)
            return -1;
 
 
    if (mm_read_banner(f, &matcode) != 0)
    {
        printf("mm_read_unsymetric: Could not process Matrix Market banner ");
        printf(" in file [%s]\n", fname);
        return -1;
    }
 
 
 
    if ( !(mm_is_real(matcode) && mm_is_matrix(matcode) &&
            mm_is_sparse(matcode)))
    {
        fprintf(stderr, "Sorry, this application does not support ");
        fprintf(stderr, "Market Market type: [%s]\n",
                mm_typecode_to_str(matcode));
        return -1;
    }
 
    /* find out size of sparse matrix: M, N, nz .... */
 
    if (mm_read_mtx_crd_size(f, &M, &N, &nz) !=0)
    {
        fprintf(stderr, "read_unsymmetric_sparse(): could not parse matrix size.\n");
        return -1;
    }
 
    *M_ = M;
    *N_ = N;
    *nz_ = nz;
 
    /* reseve memory for matrices */
 
    I = (int *) malloc(nz * sizeof(int));
    J = (int *) malloc(nz * sizeof(int));
    val = (double *) malloc(nz * sizeof(double));
 
    *val_ = val;
    *I_ = I;
    *J_ = J;
 
    /* NOTE: when reading in doubles, ANSI C requires the use of the "l"  */
    /*   specifier as in "%lg", "%lf", "%le", otherwise errors will occur */
    /*  (ANSI C X3.159-1989, Sec. 4.9.6.2, p. 136 lines 13-15)            */
 
    for (i=0; i<nz; i++)
    {
        fscanf(f, "%d %d %lg\n", &I[i], &J[i], &val[i]);
        I[i]--;  /* adjust from 1-based to 0-based */
        J[i]--;
    }
    fclose(f);
 
    return 0;
}

int mm_is_valid(MM_typecode matcode)
{
    if (!mm_is_matrix(matcode)) return 0;
    if (mm_is_dense(matcode) && mm_is_pattern(matcode)) return 0;
    if (mm_is_real(matcode) && mm_is_hermitian(matcode)) return 0;
    if (mm_is_pattern(matcode) && (mm_is_hermitian(matcode) || 
                mm_is_skew(matcode))) return 0;
    return 1;
}

int mm_read_banner(FILE *f, MM_typecode *matcode)
{
    char line[MM_MAX_LINE_LENGTH];
    char banner[MM_MAX_TOKEN_LENGTH];
    char mtx[MM_MAX_TOKEN_LENGTH]; 
    char crd[MM_MAX_TOKEN_LENGTH];
    char data_type[MM_MAX_TOKEN_LENGTH];
    char storage_scheme[MM_MAX_TOKEN_LENGTH];
    char *p;


    mm_clear_typecode(matcode);  

    if (fgets(line, MM_MAX_LINE_LENGTH, f) == NULL) 
        return MM_PREMATURE_EOF;

    if (sscanf(line, "%s %s %s %s %s", banner, mtx, crd, data_type, 
        storage_scheme) != 5)
        return MM_PREMATURE_EOF;

    for (p=mtx; *p!='\0'; *p=tolower(*p),p++);  /* convert to lower case */
    for (p=crd; *p!='\0'; *p=tolower(*p),p++);  
    for (p=data_type; *p!='\0'; *p=tolower(*p),p++);
    for (p=storage_scheme; *p!='\0'; *p=tolower(*p),p++);

    /* check for banner */
    if (strncmp(banner, MatrixMarketBanner, strlen(MatrixMarketBanner)) != 0)
        return MM_NO_HEADER;

    /* first field should be "mtx" */
    if (strcmp(mtx, MM_MTX_STR) != 0)
        return  MM_UNSUPPORTED_TYPE;
    mm_set_matrix(matcode);


    /* second field describes whether this is a sparse matrix (in coordinate
            storgae) or a dense array */


    if (strcmp(crd, MM_SPARSE_STR) == 0)
        mm_set_sparse(matcode);
    else
    if (strcmp(crd, MM_DENSE_STR) == 0)
            mm_set_dense(matcode);
    else
        return MM_UNSUPPORTED_TYPE;
    

    /* third field */

    if (strcmp(data_type, MM_REAL_STR) == 0)
        mm_set_real(matcode);
    else
    if (strcmp(data_type, MM_COMPLEX_STR) == 0)
        mm_set_complex(matcode);
    else
    if (strcmp(data_type, MM_PATTERN_STR) == 0)
        mm_set_pattern(matcode);
    else
    if (strcmp(data_type, MM_INT_STR) == 0)
        mm_set_integer(matcode);
    else
        return MM_UNSUPPORTED_TYPE;
    

    /* fourth field */

    if (strcmp(storage_scheme, MM_GENERAL_STR) == 0)
        mm_set_general(matcode);
    else
    if (strcmp(storage_scheme, MM_SYMM_STR) == 0)
        mm_set_symmetric(matcode);
    else
    if (strcmp(storage_scheme, MM_HERM_STR) == 0)
        mm_set_hermitian(matcode);
    else
    if (strcmp(storage_scheme, MM_SKEW_STR) == 0)
        mm_set_skew(matcode);
    else
        return MM_UNSUPPORTED_TYPE;
        

    return 0;
}

int mm_write_mtx_crd_size(FILE *f, int M, int N, int nz)
{
    if (fprintf(f, "%d %d %d\n", M, N, nz) != 3)
        return MM_COULD_NOT_WRITE_FILE;
    else 
        return 0;
}

int mm_read_mtx_crd_size(FILE *f, int *M, int *N, int *nz )
{
    char line[MM_MAX_LINE_LENGTH];
    int num_items_read;

    /* set return null parameter values, in case we exit with errors */
    *M = *N = *nz = 0;

    /* now continue scanning until you reach the end-of-comments */
    do 
    {
        if (fgets(line,MM_MAX_LINE_LENGTH,f) == NULL) 
            return MM_PREMATURE_EOF;
    }while (line[0] == '%');

    /* line[] is either blank or has M,N, nz */
    if (sscanf(line, "%d %d %d", M, N, nz) == 3)
        return 0;
        
    else
    do
    { 
        num_items_read = fscanf(f, "%d %d %d", M, N, nz); 
        if (num_items_read == EOF) return MM_PREMATURE_EOF;
    }
    while (num_items_read != 3);

    return 0;
}


int mm_read_mtx_array_size(FILE *f, int *M, int *N)
{
    char line[MM_MAX_LINE_LENGTH];
    int num_items_read;
    /* set return null parameter values, in case we exit with errors */
    *M = *N = 0;
	
    /* now continue scanning until you reach the end-of-comments */
    do 
    {
        if (fgets(line,MM_MAX_LINE_LENGTH,f) == NULL) 
            return MM_PREMATURE_EOF;
    }while (line[0] == '%');

    /* line[] is either blank or has M,N, nz */
    if (sscanf(line, "%d %d", M, N) == 2)
        return 0;
        
    else /* we have a blank line */
    do
    { 
        num_items_read = fscanf(f, "%d %d", M, N); 
        if (num_items_read == EOF) return MM_PREMATURE_EOF;
    }
    while (num_items_read != 2);

    return 0;
}

int mm_write_mtx_array_size(FILE *f, int M, int N)
{
    if (fprintf(f, "%d %d\n", M, N) != 2)
        return MM_COULD_NOT_WRITE_FILE;
    else 
        return 0;
}



/*-------------------------------------------------------------------------*/

/******************************************************************/
/* use when I[], J[], and val[]J, and val[] are already allocated */
/******************************************************************/

int mm_read_mtx_crd_data(FILE *f, int M, int N, int nz, int I[], int J[],
        double val[], MM_typecode matcode)
{
    int i;
    if (mm_is_complex(matcode))
    {
        for (i=0; i<nz; i++)
            if (fscanf(f, "%d %d %lg %lg", &I[i], &J[i], &val[2*i], &val[2*i+1])
                != 4) return MM_PREMATURE_EOF;
    }
    else if (mm_is_real(matcode))
    {
        for (i=0; i<nz; i++)
        {
            if (fscanf(f, "%d %d %lg\n", &I[i], &J[i], &val[i])
                != 3) return MM_PREMATURE_EOF;

        }
    }

    else if (mm_is_pattern(matcode))
    {
        for (i=0; i<nz; i++)
            if (fscanf(f, "%d %d", &I[i], &J[i])
                != 2) return MM_PREMATURE_EOF;
    }
    else
        return MM_UNSUPPORTED_TYPE;

    return 0;
        
}

int mm_read_mtx_crd_entry(FILE *f, int *I, int *J,
        double *real, double *imag, MM_typecode matcode)
{
    if (mm_is_complex(matcode))
    {
            if (fscanf(f, "%d %d %lg %lg", I, J, real, imag)
                != 4) return MM_PREMATURE_EOF;
    }
    else if (mm_is_real(matcode))
    {
            if (fscanf(f, "%d %d %lg\n", I, J, real)
                != 3) return MM_PREMATURE_EOF;

    }

    else if (mm_is_pattern(matcode))
    {
            if (fscanf(f, "%d %d", I, J) != 2) return MM_PREMATURE_EOF;
    }
    else
        return MM_UNSUPPORTED_TYPE;

    return 0;
        
}


/************************************************************************
    mm_read_mtx_crd()  fills M, N, nz, array of values, and return
                        type code, e.g. 'MCRS'

                        if matrix is complex, values[] is of size 2*nz,
                            (nz pairs of real/imaginary values)
************************************************************************/

int mm_read_mtx_crd(char *fname, int *M, int *N, int *nz, int **I, int **J, 
        double **val, MM_typecode *matcode)
{
    int ret_code;
    FILE *f;

    if (strcmp(fname, "stdin") == 0) f=stdin;
    else
    if ((f = fopen(fname, "r")) == NULL)
        return MM_COULD_NOT_READ_FILE;


    if ((ret_code = mm_read_banner(f, matcode)) != 0)
        return ret_code;

    if (!(mm_is_valid(*matcode) && mm_is_sparse(*matcode) && 
            mm_is_matrix(*matcode)))
        return MM_UNSUPPORTED_TYPE;

    if ((ret_code = mm_read_mtx_crd_size(f, M, N, nz)) != 0)
        return ret_code;


    *I = (int *)  malloc(*nz * sizeof(int));
    *J = (int *)  malloc(*nz * sizeof(int));
    *val = NULL;

    if (mm_is_complex(*matcode))
    {
        *val = (double *) malloc(*nz * 2 * sizeof(double));
        ret_code = mm_read_mtx_crd_data(f, *M, *N, *nz, *I, *J, *val, 
                *matcode);
        if (ret_code != 0) return ret_code;
    }
    else if (mm_is_real(*matcode))
    {
        *val = (double *) malloc(*nz * sizeof(double));
        ret_code = mm_read_mtx_crd_data(f, *M, *N, *nz, *I, *J, *val, 
                *matcode);
        if (ret_code != 0) return ret_code;
    }

    else if (mm_is_pattern(*matcode))
    {
        ret_code = mm_read_mtx_crd_data(f, *M, *N, *nz, *I, *J, *val, 
                *matcode);
        if (ret_code != 0) return ret_code;
    }

    if (f != stdin) fclose(f);
    return 0;
}

int mm_write_banner(FILE *f, MM_typecode matcode)
{
    char *str = mm_typecode_to_str(matcode);
    int ret_code;

    ret_code = fprintf(f, "%s %s\n", MatrixMarketBanner, str);
    free(str);
    if (ret_code !=2 )
        return MM_COULD_NOT_WRITE_FILE;
    else
        return 0;
}

int mm_write_mtx_crd(char fname[], int M, int N, int nz, int I[], int J[],
        double val[], MM_typecode matcode)
{
    FILE *f;
    int i;

    if (strcmp(fname, "stdout") == 0) 
        f = stdout;
    else
    if ((f = fopen(fname, "w")) == NULL)
        return MM_COULD_NOT_WRITE_FILE;
    
    /* print banner followed by typecode */
    fprintf(f, "%s ", MatrixMarketBanner);
    fprintf(f, "%s\n", mm_typecode_to_str(matcode));

    /* print matrix sizes and nonzeros */
    fprintf(f, "%d %d %d\n", M, N, nz);

    /* print values */
    if (mm_is_pattern(matcode))
        for (i=0; i<nz; i++)
            fprintf(f, "%d %d\n", I[i], J[i]);
    else
    if (mm_is_real(matcode))
        for (i=0; i<nz; i++)
            fprintf(f, "%d %d %20.16g\n", I[i], J[i], val[i]);
    else
    if (mm_is_complex(matcode))
        for (i=0; i<nz; i++)
            fprintf(f, "%d %d %20.16g %20.16g\n", I[i], J[i], val[2*i], 
                        val[2*i+1]);
    else
    {
        if (f != stdout) fclose(f);
        return MM_UNSUPPORTED_TYPE;
    }

    if (f !=stdout) fclose(f);

    return 0;
}
  

/**
*  Create a new copy of a string s.  mm_strdup() is a common routine, but
*  not part of ANSI C, so it is included here.  Used by mm_typecode_to_str().
*
*/
char *mm_strdup(const char *s)
{
	int len = strlen(s);
	char *s2 = (char *) malloc((len+1)*sizeof(char));
	return strcpy(s2, s);
}

char  *mm_typecode_to_str(MM_typecode matcode)
{
    char buffer[MM_MAX_LINE_LENGTH];
    char *types[4];
	char *mm_strdup(const char *);
    int error =0;

    /* check for MTX type */
    if (mm_is_matrix(matcode)) 
        types[0] = MM_MTX_STR;
    else
        error=1;

    /* check for CRD or ARR matrix */
    if (mm_is_sparse(matcode))
        types[1] = MM_SPARSE_STR;
    else
    if (mm_is_dense(matcode))
        types[1] = MM_DENSE_STR;
    else
        return NULL;

    /* check for element data type */
    if (mm_is_real(matcode))
        types[2] = MM_REAL_STR;
    else
    if (mm_is_complex(matcode))
        types[2] = MM_COMPLEX_STR;
    else
    if (mm_is_pattern(matcode))
        types[2] = MM_PATTERN_STR;
    else
    if (mm_is_integer(matcode))
        types[2] = MM_INT_STR;
    else
        return NULL;


    /* check for symmetry type */
    if (mm_is_general(matcode))
        types[3] = MM_GENERAL_STR;
    else
    if (mm_is_symmetric(matcode))
        types[3] = MM_SYMM_STR;
    else 
    if (mm_is_hermitian(matcode))
        types[3] = MM_HERM_STR;
    else 
    if (mm_is_skew(matcode))
        types[3] = MM_SKEW_STR;
    else
        return NULL;

    sprintf(buffer,"%s %s %s %s", types[0], types[1], types[2], types[3]);
    return mm_strdup(buffer);

}
/** Read Matrix Market file into COO matrix */
void read_mm(char* strpath, int* pM, int* pN, int* prealnnz, int** pI, int** pJ, double** pval){ /*{{{*/
/* 
*   taken from Matrix Market I/O library for ANSI C
*
*   See http://math.nist.gov/MatrixMarket for details.
*
*
*/

int i, M, N, nz, *I, *J;
double* val;
int ret_code;
MM_typecode matcode;
FILE* f;
if ((f = fopen(strpath, "r")) == NULL) {fprintf(stderr, "Input matrix file %s cannot be opened to read.", strpath);exit(1);}
/* READ MATRIX */
if (mm_read_banner(f, &matcode) != 0) {
    printf("Could not process Matrix Market banner.\n");    exit(1);
}
/*  This is how one can screen matrix types if their application */
/*  only supports a subset of the Matrix Market data types.      */
if (mm_is_complex(matcode) && mm_is_matrix(matcode) && mm_is_sparse(matcode) ) {
    printf("Sorry, this application does not support ");
    printf("Market Market type: [%s]\n", mm_typecode_to_str(matcode));exit(1);
}
/* find out size of sparse matrix .... */
if ((ret_code = mm_read_mtx_crd_size(f, &M, &N, &nz)) !=0) exit(1);
/* reseve memory for matrices */
I = (int *) malloc((mm_is_symmetric(matcode) ? 2*nz : nz) * sizeof(int));
J = (int *) malloc((mm_is_symmetric(matcode) ? 2*nz : nz) * sizeof(int));
val = (double *) malloc((mm_is_symmetric(matcode) ? 2*nz : nz) * sizeof(double));
*pI = I;
*pJ = J;
*pval = val;
/* NOTE: when reading in doubles, ANSI C requires the use of the "l"  */
/*   specifier as in "%lg", "%lf", "%le", otherwise errors will occur */
/*  (ANSI C X3.159-1989, Sec. 4.9.6.2, p. 136 lines 13-15)            */
int realnnz = 0;
for (i=0; i<nz; i++) {
    if(mm_is_pattern(matcode)) {
        fscanf(f, "%d %d\n", &I[realnnz], &J[realnnz]);
        val[realnnz] = 1.0;
    }
    else
        fscanf(f, "%d %d %lg\n", &I[realnnz], &J[realnnz], &val[realnnz]);
    I[realnnz]--;  /* adjust from 1-based to 0-based */
        J[realnnz]--;
    if(mm_is_symmetric(matcode) && I[realnnz] != J[realnnz]) {
        I[realnnz+1] = J[realnnz];
        J[realnnz+1] = I[realnnz];
        val[realnnz+1] = val[realnnz];
        realnnz++;
    }
    realnnz++;
}
if (f !=stdin) fclose(f);
*pM = M;
*pN = N;
*prealnnz = realnnz;
} /* ENDOF read_mm }}}*/

#endif