Commit 2eaa994f authored by cmorales's avatar cmorales
Browse files

Merge branch 'r2.1-dev' of https://repository.prace-ri.eu/git/UEABS/ueabs into r2.1-dev

parents f8248430 070f6323
......@@ -13,7 +13,7 @@ Contacts: Valeriu Codreanu <mailto:valeriu.codreanu@surfsara.nl> or Walter Lioen
Current Release
---------------
The current release is Version 2.1.
The current release is Version 2.1 (April 30, 2019).
See also the [release notes and history](RELEASES.md).
Running the suite
......@@ -21,7 +21,7 @@ Running the suite
Instructions to run each test cases of each codes can be found in the subdirectories of this repository.
For more details of the codes and datasets, and sample results, please see http://www.prace-ri.eu/IMG/pdf/d7.4_3ip.pdf
For more details of the codes and datasets, and sample results, please see the PRACE-5IP benchmarking deliverable D7.5 "Evaluation of Accelerated and Non-accelerated Benchmarks" (April 18, 2019) at http://www.prace-ri.eu/public-deliverables/ .
The application codes that constitute the UEABS are:
---------------------------------------------------
......@@ -45,10 +45,10 @@ The application codes that constitute the UEABS are:
The Alya System is a Computational Mechanics code capable of solving different physics, each one with its own modelization characteristics, in a coupled way. Among the problems it solves are: convection-diffusion reactions, incompressible flows, compressible flows, turbulence, bi-phasic flows and free surface, excitable media, acoustics, thermal flow, quantum mechanics (DFT) and solid mechanics (large strain). ALYA is written in Fortran 90/95 and parallelized using MPI and OpenMP.
- Web site: https://www.bsc.es/computer-applications/alya-system
- Code download: http://www.prace-ri.eu/UEABS/ALYA/1.1/alya3226.tar.gz
- Code download: https://repository.prace-ri.eu/ueabs/ALYA/1.1/alya3226.tar.gz
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/alya/ALYA_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/ALYA/1.3/ALYA_TestCaseA.tar.bz2
- Test Case B: http://www.prace-ri.eu/UEABS/ALYA/1.3/ALYA_TestCaseB.tar.bz2
- Test Case A: https://repository.prace-ri.eu/ueabs/ALYA/1.3/ALYA_TestCaseA.tar.bz2
- Test Case B: https://repository.prace-ri.eu/ueabs/ALYA/1.3/ALYA_TestCaseB.tar.bz2
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/alya/ALYA_Run_README.txt
# Code_Saturne <a name="saturne"></a>
......@@ -58,11 +58,11 @@ Code_Saturne&#174; is a multipurpose Computational Fluid Dynamics (CFD) software
Code_Saturne&#174; is based on a co-located finite volume approach that can handle three-dimensional meshes built with any type of cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral) and with any type of grid structure (unstructured, block structured, hybrid). The code is able to simulate either incompressible or compressible flows, with or without heat transfer, and has a variety of models to account for turbulence. Dedicated modules are available for specific physics such as radiative heat transfer, combustion (e.g. with gas, coal and heavy fuel oil), magneto-hydro dynamics, and compressible flows, two-phase flows. The software comprises of around 350 000 lines of source code, with about 37% written in Fortran90, 50% in C and 15% in Python. The code is parallelised using MPI with some OpenMP.
- Web site: http://code-saturne.org
- Code download: http://code-saturne.org/cms/download or http://www.prace-ri.eu/UEABS/Code_Saturne/1.3/Code_Saturne-4.0.6_UEABS.tar.gz
- Code download: http://code-saturne.org/cms/download or https://repository.prace-ri.eu/ueabs/Code_Saturne/1.3/Code_Saturne-4.0.6_UEABS.tar.gz
- Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license.
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf
- Test Case A: http://www.prace-ri.eu/UEABS/Code_Saturne/1.3/Code_Saturne_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/Code_Saturne/1.3/Code_Saturne_TestCaseB.tar.gz
- Test Case A: https://repository.prace-ri.eu/ueabs/Code_Saturne/1.3/Code_Saturne_TestCaseA.tar.gz
- Test Case B: https://repository.prace-ri.eu/ueabs/Code_Saturne/1.3/Code_Saturne_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf
# CP2K <a name="cp2k"></a>
......@@ -84,10 +84,10 @@ CP2K is written in Fortran 2008 and can be run in parallel using a combination o
GADGET is a freely available code for cosmological N-body/SPH simulations on massively parallel computers with distributed memory written by Volker Springel, Max-Plank-Institute for Astrophysics, Garching, Germany. GADGET is written in C and uses an explicit communication model that is implemented with the standardized MPI communication interface. The code can be run on essentially all supercomputer systems presently in use, including clusters of workstations or individual PCs. GADGET computes gravitational forces with a hierarchical tree algorithm (optionally in combination with a particle-mesh scheme for long-range gravitational forces) and represents fluids by means of smoothed particle hydrodynamics (SPH). The code can be used for studies of isolated systems, or for simulations that include the cosmological expansion of space, either with, or without, periodic boundary conditions. In all these types of simulations, GADGET follows the evolution of a self-gravitating collisionless N-body system, and allows gas dynamics to be optionally included. Both the force computation and the time stepping of GADGET are fully adaptive, with a dynamic range that is, in principle, unlimited. GADGET can therefore be used to address a wide array of astrophysics interesting problems, ranging from colliding and merging galaxies, to the formation of large-scale structure in the Universe. With the inclusion of additional physical processes such as radiative cooling and heating, GADGET can also be used to study the dynamics of the gaseous intergalactic medium, or to address star formation and its regulation by feedback processes.
- Web site: http://www.mpa-garching.mpg.de/gadget/
- Code download: http://www.prace-ri.eu/UEABS/GADGET/gadget3_Source.tar.gz
- Code download: https://repository.prace-ri.eu/ueabs/GADGET/gadget3_Source.tar.gz
- Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license.
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gadget/gadget3_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/GADGET/gadget3_TestCaseA.tar.gz
- Test Case A: https://repository.prace-ri.eu/ueabs/GADGET/gadget3_TestCaseA.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gadget/gadget3_Run_README.txt
# GPAW <a name="gpaw"></a>
......@@ -137,8 +137,8 @@ Instructions:
- Web site: http://www.gromacs.org/
- Code download: http://www.gromacs.org/Downloads The UEABS benchmark cases require the use of 5.1.x or newer branch: the latest 2016 version is suggested.
- Test Case A: http://www.prace-ri.eu/UEABS/GROMACS/1.2/GROMACS_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/GROMACS/1.2/GROMACS_TestCaseB.tar.gz
- Test Case A: https://repository.prace-ri.eu/ueabs/GROMACS/1.2/GROMACS_TestCaseA.tar.gz
- Test Case B: https://repository.prace-ri.eu/ueabs/GROMACS/1.2/GROMACS_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gromacs/GROMACS_Run_README.txt
......@@ -156,8 +156,8 @@ NAMD is written in C++ and parallelised using Charm++ parallel objects, which ar
- Web site: http://www.ks.uiuc.edu/Research/namd/
- Code download: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/namd/NAMD_Download_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/namd/NAMD_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/NAMD/1.2/NAMD_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/NAMD/1.2/NAMD_TestCaseB.tar.gz
- Test Case A: https://repository.prace-ri.eu/ueabs/NAMD/1.2/NAMD_TestCaseA.tar.gz
- Test Case B: https://repository.prace-ri.eu/ueabs/NAMD/1.2/NAMD_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/namd/NAMD_Run_README.txt
# NEMO <a name="nemo"></a>
......@@ -249,7 +249,7 @@ Kernel D consists of the core matrix-vector multiplication routine for standard
Kernel E consists of a full conjugate gradient solution using Wilson fermions. Lattice size is 643 x 3.
- Code download: http://www.prace-ri.eu/UEABS/QCD/1.3/QCD_Source_TestCaseA.tar.gz
- Code download: https://repository.prace-ri.eu/ueabs/QCD/1.3/QCD_Source_TestCaseA.tar.gz
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/qcd/QCD_Build_README.txt
- Test Case A: included with source download
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/qcd/QCD_Run_README.txt
......@@ -264,8 +264,8 @@ QUANTUM ESPRESSO is written mostly in Fortran90, and parallelised using MPI and
- Web site: http://www.quantum-espresso.org/
- Code download: http://www.quantum-espresso.org/download/
- Build instructions: http://www.quantum-espresso.org/wp-content/uploads/Doc/user_guide/
- Test Case A: http://www.prace-ri.eu/UEABS/Quantum_Espresso/QuantumEspresso_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/Quantum_Espresso/QuantumEspresso_TestCaseB.tar.gz
- Test Case A: https://repository.prace-ri.eu/ueabs/Quantum_Espresso/QuantumEspresso_TestCaseA.tar.gz
- Test Case B: https://repository.prace-ri.eu/ueabs/Quantum_Espresso/QuantumEspresso_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/quantum_espresso/QE-guide.txt
# SHOC <a name="shoc"></a>
......
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