Specfem3d: add compilation validation with scritps

specfem3d/compile.sh

@@ -26,6 +26,8 @@ Untar(){
     cd specfem3d_globe/
     # Checkout of 31 ocotbre 2017 version
     git checkout b1d6ba966496f269611eff8c2cf1f22bcdac2bd9
+    # Checkout v7.0.2, last version : unstable : tested on differents architectures and all simulations failed
+    #git checkout v7.0.2
 
     #Copy sources
     #source_dir=$HOME/git/specfem3d_globe
@@ -40,11 +42,12 @@ Install(){
     echo "1. Test Case A is designed to run on Tier-1 sized systems (up to around 1,000 x86 cores, or equivalent)"
     echo "2. Test Case B is designed to run on Tier-0 sized systems (up to around 10,000 x86 cores, or equivalent)"
     echo "3. Test Case C is designed to run on 1 or 2 node(s)"
+    echo "4. small_benchmark_run_to_test_more_complex_Earth : specfem3D_globe native benchmark to validate the behaviour of the code designed to run on 1 or 2 node(s)"
     while true
     do
-        echo "===> Choose Test Case : (1, 2 or 3)"
+        echo "===> Choose Test Case : (1, 2, 3 or 4)"
         read answer
-        if [[ $answer -eq 1 || $answer -eq 2 || $answer -eq 3 ]]; then break;fi
+        if [[ $answer -eq 1 || $answer -eq 2 || $answer -eq 3 || $answer -eq 4 ]]; then break;fi
     done
     if [ $answer = "1" ]; then
         echo "===> Copy test case A"
@@ -62,13 +65,18 @@ Install(){
         tar zxvf $HOME/tarballs/SPECFEM3D_TestCaseB.tar.gz
         cp SPECFEM3D_TestCaseB/* $install_dir/specfem3d_globe/DATA/.
         rm -rf SPECFEM3D_TestCaseB
-    else
+    elif [ $answer = "3" ]; then
 	echo "===> Copy test case C"
         export install_dir=$install_dir/TestCaseC
         mkdir -p $install_dir
         mv $install_dir/../specfem3d_globe  $install_dir/.
         cp $ueabs_dir/test_cases/SPECFEM3D_TestCaseC/* $install_dir/specfem3d_globe/DATA/.
-
+    elif [ $answer = "4" ]; then
+	echo "===> small_benchmark_run_to_test_more_complex_Earth"
+	cd $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth
+	sed -i "38a ./configure  --enable-openmp" run_this_example.sh
+	echo "compilation proccess will be done directly in the job"
+	exit 
     fi
     cd $install_dir/specfem3d_globe
     if [ $machine = "daint-gpu" ] || [ $machine = "davide" ]; then
@@ -104,19 +112,22 @@ Clean(){
 		answer=0
 		while true
                 do
-                    echo "===> Choose Test Case to delete : (1, 2, 3)"
+                    echo "===> Choose Test Case to delete : (1, 2, 3 or 4)"
                     echo "1 : $install_dir/TestCaseA"
                     echo "2 : $install_dir/TestCaseB"
                     echo "3 : $install_dir/TestCaseC"
+                    echo "4 : Not necessary to delete this folder"
                     read answer
-                    if [[ $answer -eq 1 || $answer -eq 2 || $answer -eq 3 ]]; then break;fi
+                    if [[ $answer -eq 1 || $answer -eq 2 || $answer -eq 3 || $answer -eq 4 ]]; then break;fi
                 done
                 if [ $answer = "1" ]; then
                         rm -rf $install_dir/TestCaseA
                 elif [ $answer = "2" ]; then
                         rm -rf $install_dir/TestCaseB
-                else
+                elif [ $answer = "3" ]; then
                         rm -rf $install_dir/TestCaseC
+                else
+			echo "Nothing has been deleted"
                 fi
 	else
 		echo "Error with install_dir variable"
@@ -129,7 +140,7 @@ Deploy(){
     if [ $machine = "occigen" ] || [ $machine = "marenostrum" ] || [ $machine = "marconi-knl" ] || [ $machine = "daint-cpu-only" ] || [ $machine = "daint-gpu" ]  || [ $machine = "davide" ] || [ $machine = "juwels" ] || [ $machine = "irene-skl" ] || [ $machine = "irene-knl" ] || [ $machine = "dibona" ] || [ $machine = "frioul" ]  || [ $machine = "deepsdv" ] || [ $machine = "hazelhen" ];then
         echo "==> Install on $machine :"
 	mkdir -p $install_dir
-	Clean
+#	Clean
         export ueabs_dir=`pwd`
         Untar
         Install

specfem3d/job_script/job_occigen_small_benchmark_run_to_test_more_complex_Earth.slurm

+#!/bin/bash
+#SBATCH -J job_occigen_small_benchmark_run_to_test_more_complex_Earth.slurm
+#SBATCH --nodes=1
+#SBATCH --ntasks-per-node=24
+#SBATCH --time=23:59:59
+#SBATCH --output specfem_more_small_benchmark_run_to_test_more_complex_Earth-%j.out 
+#SBATCH -C HSW24
+
+#set -e
+source ../env/env_occigen
+
+cd $install_dir/specfem3d_globe/EXAMPLES/small_benchmark_run_to_test_more_complex_Earth
+
+./run_this_example.sh
+
+echo
+echo "running seismogram comparisons:"
+echo
+
+cd $install_dir/specfem3d_globe/
+# uncompress seismograms
+if [ -e EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES_reference_OK/II.AAK.MXE.sem.ascii.bz2 ]; then
+  echo
+  echo "unzipping references..."
+  echo
+  mkdir OUTPUT_FILES_reference_OK/
+  bunzip2 EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES_reference_OK/*.bz2
+  echo
+  echo
+fi
+
+module purge
+module load intel/17.0 python/2.7.13
+# compares seismograms by plotting correlations
+./utils/compare_seismogram_correlations.py EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES/ EXAMPLES/small_benchmark_run_to_test_more_complex_Earth/OUTPUT_FILES_reference_OK/
+
+echo
+echo "done"
+echo
+
+