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Commit 4dc72755 authored by Cedric Jourdain's avatar Cedric Jourdain
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Update specfem3d compile and submission script ofr Juwels

parent eb09b797
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specfem3d/compile.sh
View file @ 4dc72755
......@@ -7,6 +7,7 @@ echo " - daint-gpu "
echo " - daint-cpu-only "
echo " - davide "
echo " - juwels"
echo " - juwels_2018"
echo " - irene-skl "
echo " - irene-knl "
echo " - dibona "
......@@ -26,14 +27,10 @@ Untar(){
if [[ $code != "0" ]]; then
echo "Git clone failed, try a hard copy:"
Copy
break 1
else
cd specfem3d_globe/
# Checkout of 31 ocotbre 2017 version
git checkout b1d6ba966496f269611eff8c2cf1f22bcdac2bd9
# Checkout v7.0.2, last version : unstable : tested on differents architectures and all simulations failed
#git checkout v7.0.2
git checkout b1d6ba966496f269611eff8c2cf1f22bcdac2bd9 # Checkout of 31 ocotbre 2017 version
#git checkout v7.0.2 # Checkout v7.0.2, last version : unstable : tested on differents architectures and all simulations failed
fi
cd $ueabs_dir
}
......@@ -132,7 +129,7 @@ Clean(){
Deploy(){
echo "install_dir ="$install_dir
if [ $machine = "occigen" ] || [ $machine = "marenostrum" ] || [ $machine = "marconi-knl" ] || [ $machine = "daint-cpu-only" ] || [ $machine = "daint-gpu" ] || [ $machine = "davide" ] || [ $machine = "juwels" ] || [ $machine = "irene-skl" ] || [ $machine = "irene-knl" ] || [ $machine = "dibona" ] || [ $machine = "frioul" ] || [ $machine = "deepsdv" ] || [ $machine = "hazelhen" ];then
if [ $machine = "occigen" ] || [ $machine = "marenostrum" ] || [ $machine = "marconi-knl" ] || [ $machine = "daint-cpu-only" ] || [ $machine = "daint-gpu" ] || [ $machine = "davide" ] || [ $machine = "juwels" ] || [ $machine = "irene-skl" ] || [ $machine = "irene-knl" ] || [ $machine = "dibona" ] || [ $machine = "frioul" ] || [ $machine = "deepsdv" ] || [ $machine = "hazelhen" ] || [ $machine = "juwels_2018" ];then
echo "==> Install on $machine :"
mkdir -p $install_dir
# Clean
......
specfem3d/env/env_juwels
View file @ 4dc72755
#!/bin/bash
module purge
module load Intel/2019.0.117-GCC-7.3.0 ParaStationMPI/5.2.1-1 #IntelMPI/2019.0.117
module --force purge
module use $OTHERSTAGES
module load Stages/Devel-2019a
module load Intel/2019.5.281-GCC-8.3.0 IntelMPI/2019.7.217
export machine=juwels
export software=specfem3d_globe
export version=31octobre
#export install_dir=$HOME/benchmarks/$machine/$software/$version/
export install_dir=$SCRATCH_cprpb66/benchmarks/$machine/$software/$version/
export CC="mpicc"
export FC="mpifort"
#export CC="mpiicc"
#export FC="mpiifort"
export install_dir=$SCRATCH_prpb85/benchmarks/$machine/$software/$version/
export CC="mpiicc"
export FC="mpiifort"
export MPIFC=$FC
#export FCFLAGS=" -g -O3 -qopenmp -xhost -DUSE_FP32 -DOPT_STREAMS -fp-model fast=2 -traceback -mcmodel=large"
#export CFLAGS=" -g -O3 -xhost "
export FCFLAGS=" -g -O3 -qopenmp -xCORE-AVX512 -mtune=skylake -ipo -DUSE_FP32 -DOPT_STREAMS -fp-model fast=2 -traceback -mcmodel=large"
export CFLAGS=" -g -O3 -xCORE-AVX512 -mtune=skylake -ipo"
export FCFLAGS=" -O3 -qopenmp -xCORE-AVX512 -mtune=skylake -ipo -no-prec-div -no-prec-sqrt -fma -qopt-zmm-usage=high -DUSE_FP32 -DOPT_STREAMS -fp-model fast=2 -traceback -mcmodel=large"
export CFLAGS=" -O3 -qopenmp -xCORE-AVX512 -mtune=skylake -ipo -no-prec-div -no-prec-sqrt -fma -qopt-zmm-usage=high"
specfem3d/job_script/job_juwels_test_case_A.slurm
View file @ 4dc72755
#!/bin/bash -x
#SBATCH -J Test_case_A
#SBATCH --account=prpb66
#SBATCH --account=prpb85
#SBATCH --nodes=24
#SBATCH --ntasks-per-node=4
#SBATCH --cpus-per-task=12
#SBATCH --time=00:30:00
#SBATCH --time=01:59:59
#SBATCH --partition=batch
#SBATCH --output=specfem_small_juwels_96MPI_12OMP_srun_AVX512_mtune_skl_ParaStationMPI-%j.output
#SBATCH --acctg-freq=task=1
#SBATCH --output=specfem_%x_juwels-%j.output
##SBATCH --acctg-freq=task=1
set -e
source ../env/env_juwels
cat ../env/env_juwels
cat job_juwels_test_case_A.slurm
cd $install_dir/TestCaseA/specfem3d_globe
export I_MPI_DOMAIN=auto
export I_MPI_PIN_RESPECT_CPUSET=0
export I_MPI_DEBUG=4
#export I_MPI_DEBUG=5
export I_MPI_PMI_VALUE_LENGTH_MAX=1800
#Make sure that OMP_NUM_THREADS / KMP_HW_SUBSET = cpus-per-task
export KMP_HW_SUBSET=1T
export OMP_NUM_THREADS=12
#export OMP_NUM_THREADS=${SLURM_CPUS_PER_TASK}
export OMP_NUM_THREADS=${SLURM_CPUS_PER_TASK}
export KMP_AFFINITY=granularity=core,compact
export FORT_BUFFERED=true
ulimit -s unlimited
......@@ -49,7 +50,6 @@ echo "SLURM_NNODES=" $SLURM_NNODES
echo "MPI_PROCESS $MPI_PROCESS"
echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
#time mpirun -n ${MPI_PROCESS} ${MESHER_EXE}
time srun -n ${MPI_PROCESS} ${MESHER_EXE}
echo " mesher done: `date`"
echo
......@@ -63,9 +63,7 @@ echo
echo `date`
echo starting run in current directory $PWD
echo
#time mpirun -n ${MPI_PROCESS} ${SOLVER_EXE}
time srun -n ${MPI_PROCESS} ${SOLVER_EXE}
echo "finished successfully"
echo `date`
specfem3d/job_script/job_juwels_test_case_B.slurm
View file @ 4dc72755
#!/bin/bash -x
#SBATCH -J Test_case_B
#SBATCH --account=prpb66
#SBATCH --account=prpb85
#SBATCH --nodes=384
#SBATCH --ntasks-per-node=4
#SBATCH --cpus-per-task=6
#SBATCH --cpus-per-task=12
#SBATCH --time=00:30:00
#SBATCH --partition=batch
#SBATCH --output=specfem_TestCaseB_juwels_12OMP-HT-ParaStationMPI-%j.output
#SBATCH --output=specfem_%x_juwels-HT-%j.output
set -e
cat job_juwels_test_case_B.slurm
source ../env/env_juwels
cd $install_dir/TestCaseB/specfem3d_globe
#export I_MPI_DOMAIN=auto
#export I_MPI_PIN_RESPECT_CPUSET=0
#export I_MPI_DEBUG=4
export I_MPI_PMI_VALUE_LENGTH_MAX=1800
#Make sure that OMP_NUM_THREADS / KMP_HW_SUBSET = cpus-per-task
export KMP_HW_SUBSET=2T
export OMP_NUM_THREADS=12
#export OMP_NUM_THREADS=${SLURM_CPUS_PER_TASK}
export OMP_NUM_THREADS=24
export KMP_AFFINITY=granularity=thread,compact
export FORT_BUFFERED=true
#ulimit -s unlimited
ulimit -s unlimited
MESHER_EXE=./bin/xmeshfem3D
SOLVER_EXE=./bin/xspecfem3D
......@@ -48,7 +47,6 @@ echo "SLURM_NNODES=" $SLURM_NNODES
echo "MPI_PROCESS $MPI_PROCESS"
echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
#time mpirun -n ${MPI_PROCESS} ${MESHER_EXE}
time srun -n ${MPI_PROCESS} ${MESHER_EXE}
echo " mesher done: `date`"
echo
......@@ -62,10 +60,7 @@ echo
echo `date`
echo starting run in current directory $PWD
echo
#unset FORT_BUFFERED
#time mpirun -n ${MPI_PROCESS} ${SOLVER_EXE}
time srun -n ${MPI_PROCESS} ${SOLVER_EXE}
echo "finished successfully"
echo `date`
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