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UEABS
ueabs
Commits
5eb28dd4
Commit
5eb28dd4
authored
Dec 18, 2018
by
Cedric Jourdain
Browse files
Add script part for davide+merge
parents
c79ab795
4f9ca4a2
Changes
8
Hide whitespace changes
Inline
Side-by-side
specfem3d/.gitignore
View file @
5eb28dd4
*.log
*.out
*.output
specfem3d/compile.sh
View file @
5eb28dd4
...
...
@@ -5,7 +5,7 @@ echo " - occigen"
echo
" - marenostrum "
echo
" - marconi-knl "
echo
" - daint-gpu "
echo
" - daint-
m
c "
echo
" - daint-c
pu-only
"
echo
" - davide "
read
machine
...
...
@@ -16,8 +16,8 @@ Untar(){
#Clone the repository
cd
$install_dir
git
-c
http.sslVerify
=
false
clone https://github.com/geodynamics/specfem3d_globe.git
# Checkout of 31 ocotbre 2017 version
cd
specfem3d_globe/
# Checkout of 31 ocotbre 2017 version
git checkout b1d6ba966496f269611eff8c2cf1f22bcdac2bd9
#Copy sources
...
...
@@ -94,7 +94,7 @@ Clean(){
Deploy
(){
echo
"install_dir ="
$install_dir
if
[
$machine
=
"occigen"
]
||
[
$machine
=
"marenostrum"
]
||
[
$machine
=
"marconi-knl"
]
||
[
$machine
=
"daint-
m
c"
]
||
[
$machine
=
"daint-gpu"
]
||
[
$machine
=
"davide"
]
;
then
if
[
$machine
=
"occigen"
]
||
[
$machine
=
"marenostrum"
]
||
[
$machine
=
"marconi-knl"
]
||
[
$machine
=
"daint-c
pu-only
"
]
||
[
$machine
=
"daint-gpu"
]
||
[
$machine
=
"davide"
]
;
then
echo
"==> Install on
$machine
:"
#Clean
mkdir
-p
$install_dir
...
...
specfem3d/env/env_daint-cpu-only
0 → 100644
View file @
5eb28dd4
#!/bin/bash
#module purge
module load daint-gpu
module load PrgEnv-cray
export
software
=
specfem3d_globe
export
version
=
31octobre
export
install_dir
=
$SCRATCH
/benchmarks/daint-gpu/
$software
/
$version
/cpu-only
export
CC
=
"cc"
export
FC
=
"ftn"
export
MPIFC
=
$FC
export
FCFLAGS
=
"-g -O3 -h omp -h thread3 -h vector3 -h fp3 -h autothread"
export
CFLAGS
=
"-g -O3 -h omp -h thread3 -h vector3 -h fp3 -h autothread"
specfem3d/env/env_daint-gpu
0 → 100644
View file @
5eb28dd4
#!/bin/bash
#module purge
module load daint-gpu
module load craype-accel-nvidia60
module load PrgEnv-cray
export
machine
=
daint-gpu
export
software
=
specfem3d_globe
export
version
=
31octobre
export
install_dir
=
$SCRATCH
/benchmarks/
$machine
/
$software
/
$version
/gpu
export
CC
=
"cc"
export
FC
=
"ftn"
export
MPIFC
=
$FC
export
FCFLAGS
=
" -g -O3 -h omp -O ipa3 -h fp3 -O thread3 -h autothread"
# -xhost -DUSE_FP32 -DOPT_STREAMS -fp-model fast=2 -traceback -mcmodel=large"
export
CFLAGS
=
" -g -O3 -h omp -h ipa3 -h fp3 -h thread3 -h autothread"
specfem3d/job_script/job_daint-cpu-only_test_case_A.slurm
0 → 100644
View file @
5eb28dd4
#!/bin/bash -l
#SBATCH --job-name=specfem3D_test_case_A
#SBATCH --time=01:30:00
#SBATCH --nodes=24
#SBATCH --ntasks-per-core=2
#SBATCH --ntasks-per-node=4
#SBATCH --cpus-per-task=6
#SBATCH --partition=normal
#SBATCH --constraint=gpu
#SBATCH --output=specfem3D_test_case_A_daint-cpu-%j.output
set
-e
source
../env/env_daint-cpu-only
cd
$install_dir
/TestCaseA/specfem3d_globe
export
OMP_NUM_THREADS
=
$SLURM_CPUS_PER_TASK
ulimit
-s
unlimited
MESHER_EXE
=
./bin/xmeshfem3D
SOLVER_EXE
=
./bin/xspecfem3D
# backup files used for this simulation
cp
DATA/Par_file OUTPUT_FILES/
cp
DATA/STATIONS OUTPUT_FILES/
cp
DATA/CMTSOLUTION OUTPUT_FILES/
##
## mesh generation
##
sleep
2
echo
echo
`
date
`
echo
"starting MPI mesher"
echo
MPI_PROCESS
=
`
echo
"
$SLURM_NNODES
*
$SLURM_NTASKS_PER_NODE
"
| bc
-l
`
echo
"SLURM_NTASKS_PER_NODE = "
$SLURM_NTASKS_PER_NODE
echo
"SLURM_CPUS_PER_TASKS = "
$SLURM_CPUS_PER_TASK
echo
"SLURM_NNODES="
$SLURM_NNODES
echo
"MPI_PROCESS
$MPI_PROCESS
"
time
srun
-n
${
MPI_PROCESS
}
${
MESHER_EXE
}
echo
" mesher done:
`
date
`
"
echo
##
## forward simulation
##
sleep
2
echo
echo
`
date
`
echo
starting run
in
current directory
$PWD
echo
time
srun
-n
${
MPI_PROCESS
}
${
SOLVER_EXE
}
echo
"finished successfully"
echo
`
date
`
specfem3d/job_script/job_daint-cpu-only_test_case_B.slurm
0 → 100644
View file @
5eb28dd4
#!/bin/bash -l
#SBATCH --job-name=specfem3D_test_case_B
#SBATCH --time=00:30:00
#SBATCH --nodes=384
#SBATCH --ntasks-per-core=2
#SBATCH --ntasks-per-node=4
#SBATCH --cpus-per-task=6
#SBATCH --partition=normal
#SBATCH --constraint=gpu
#SBATCH --output=specfem3D_test_case_B_daint-cpu-%j.output
set
-e
source
../env/env_daint-gpu
cd
$install_dir
/TestCaseB/specfem3d_globe
export
OMP_NUM_THREADS
=
$SLURM_CPUS_PER_TASK
ulimit
-s
unlimited
MESHER_EXE
=
./bin/xmeshfem3D
SOLVER_EXE
=
./bin/xspecfem3D
# backup files used for this simulation
cp
DATA/Par_file OUTPUT_FILES/
cp
DATA/STATIONS OUTPUT_FILES/
cp
DATA/CMTSOLUTION OUTPUT_FILES/
##
## mesh generation
##
sleep
2
echo
echo
`
date
`
echo
"starting MPI mesher"
echo
MPI_PROCESS
=
`
echo
"
$SLURM_NNODES
*
$SLURM_NTASKS_PER_NODE
"
| bc
-l
`
echo
"SLURM_NTASKS_PER_NODE = "
$SLURM_NTASKS_PER_NODE
echo
"SLURM_CPUS_PER_TASKS = "
$SLURM_CPUS_PER_TASK
echo
"SLURM_NNODES="
$SLURM_NNODES
echo
"MPI_PROCESS
$MPI_PROCESS
"
time
srun
-n
${
MPI_PROCESS
}
${
MESHER_EXE
}
echo
" mesher done:
`
date
`
"
echo
##
## forward simulation
##
sleep
2
echo
echo
`
date
`
echo
starting run
in
current directory
$PWD
echo
time
srun
-n
${
MPI_PROCESS
}
${
SOLVER_EXE
}
echo
"finished successfully"
echo
`
date
`
specfem3d/job_script/job_daint-gpu_test_case_A.slurm
0 → 100644
View file @
5eb28dd4
#!/bin/bash -l
#SBATCH --job-name=specfem3D_test_case_A
#SBATCH --time=01:00:00
#SBATCH --nodes=24
#SBATCH --ntasks-per-core=2
#SBATCH --ntasks-per-node=4
#SBATCH --cpus-per-task=6
#SBATCH --partition=normal
#SBATCH --constraint=gpu
#SBATCH --output=specfem3D_test_case_A_daint-gpu-%j.output
set
-e
source
../env/env_daint-gpu
cd
$install_dir
/TestCaseA/specfem3d_globe
export
OMP_NUM_THREADS
=
$SLURM_CPUS_PER_TASK
export
CRAY_CUDA_MPS
=
1
ulimit
-s
unlimited
MESHER_EXE
=
./bin/xmeshfem3D
SOLVER_EXE
=
./bin/xspecfem3D
# backup files used for this simulation
cp
DATA/Par_file OUTPUT_FILES/
cp
DATA/STATIONS OUTPUT_FILES/
cp
DATA/CMTSOLUTION OUTPUT_FILES/
##
## mesh generation
##
sleep
2
echo
echo
`
date
`
echo
"starting MPI mesher"
echo
MPI_PROCESS
=
`
echo
"
$SLURM_NNODES
*
$SLURM_NTASKS_PER_NODE
"
| bc
-l
`
echo
"SLURM_NTASKS_PER_NODE = "
$SLURM_NTASKS_PER_NODE
echo
"SLURM_CPUS_PER_TASKS = "
$SLURM_CPUS_PER_TASK
echo
"SLURM_NNODES="
$SLURM_NNODES
echo
"MPI_PROCESS
$MPI_PROCESS
"
time
srun
-n
${
MPI_PROCESS
}
${
MESHER_EXE
}
echo
" mesher done:
`
date
`
"
echo
##
## forward simulation
##
sleep
2
echo
echo
`
date
`
echo
starting run
in
current directory
$PWD
echo
#unset FORT_BUFFERED
time
srun
-n
${
MPI_PROCESS
}
${
SOLVER_EXE
}
echo
"finished successfully"
echo
`
date
`
specfem3d/job_script/job_daint-gpu_test_case_B.slurm
0 → 100644
View file @
5eb28dd4
#!/bin/bash -l
#SBATCH --job-name=specfem3D_test_case_B
#SBATCH --time=01:00:00
#SBATCH --nodes=384
#SBATCH --ntasks-per-core=2
#SBATCH --ntasks-per-node=4
#SBATCH --cpus-per-task=6
#SBATCH --partition=normal
#SBATCH --constraint=gpu
#SBATCH --output=specfem3D_test_case_B_daint-gpu-%j.output
set
-e
source
../env/env_daint-gpu
cd
$install_dir
/TestCaseB/specfem3d_globe
export
OMP_NUM_THREADS
=
$SLURM_CPUS_PER_TASK
export
CRAY_CUDA_MPS
=
1
ulimit
-s
unlimited
MESHER_EXE
=
./bin/xmeshfem3D
SOLVER_EXE
=
./bin/xspecfem3D
# backup files used for this simulation
cp
DATA/Par_file OUTPUT_FILES/
cp
DATA/STATIONS OUTPUT_FILES/
cp
DATA/CMTSOLUTION OUTPUT_FILES/
##
## mesh generation
##
sleep
2
echo
echo
`
date
`
echo
"starting MPI mesher"
echo
MPI_PROCESS
=
`
echo
"
$SLURM_NNODES
*
$SLURM_NTASKS_PER_NODE
"
| bc
-l
`
echo
"SLURM_NTASKS_PER_NODE = "
$SLURM_NTASKS_PER_NODE
echo
"SLURM_CPUS_PER_TASKS = "
$SLURM_CPUS_PER_TASK
echo
"SLURM_NNODES="
$SLURM_NNODES
echo
"MPI_PROCESS
$MPI_PROCESS
"
time
srun
-n
${
MPI_PROCESS
}
${
MESHER_EXE
}
echo
" mesher done:
`
date
`
"
echo
##
## forward simulation
##
sleep
2
echo
echo
`
date
`
echo
starting run
in
current directory
$PWD
echo
#unset FORT_BUFFERED
time
srun
-n
${
MPI_PROCESS
}
${
SOLVER_EXE
}
echo
"finished successfully"
echo
`
date
`
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