Add slurm script for Occigen

specfem3d/job_script/job_occigen_test_case_A.slurm

+#!/bin/bash
+#SBATCH -J Test_case_A
+#SBATCH --nodes=24
+#SBATCH --ntasks-per-node=4
+#SBATCH --cpus-per-task=6
+#SBATCH --time=00:30:00
+#SBATCH --mem=118000
+#SBATCH --output  specfem_small_118G_%j.output
+#SBATCH -C HSW24
+set -e
+
+source ./env/env_occigen
+cd $install_dir/specfem3d_globe
+
+export I_MPI_DOMAIN=auto
+export I_MPI_PIN_RESPECT_CPUSET=0
+export I_MPI_DEBUG=4
+
+#Make sure that OMP_NUM_THREADS / KMP_HW_SUBSET = cpus-per-task
+export KMP_HW_SUBSET=2T
+export OMP_NUM_THREADS=12
+
+ulimit -s unlimited
+
+MESHER_EXE=./bin/xmeshfem3D
+SOLVER_EXE=./bin/xspecfem3D
+
+# backup files used for this simulation
+cp DATA/Par_file OUTPUT_FILES/
+cp DATA/STATIONS OUTPUT_FILES/
+cp DATA/CMTSOLUTION OUTPUT_FILES/
+
+##
+## mesh generation
+##
+sleep 2
+
+echo
+echo `date`
+echo "starting MPI mesher"
+echo
+
+MPI_PROCESS=` echo "$SLURM_NNODES*$SLURM_NTASKS_PER_NODE" | bc -l` 
+echo "SLURM_NTASKS_PER_NODE = " $SLURM_NTASKS_PER_NODE
+echo "SLURM_CPUS_PER_TASKS = " $SLURM_CPUS_PER_TASK
+echo "SLURM_NNODES=" $SLURM_NNODES
+echo "MPI_PROCESS $MPI_PROCESS"
+
+time mpirun -n ${MPI_PROCESS} ${MESHER_EXE}
+echo "  mesher done: `date`"
+echo
+
+##
+## forward simulation
+##
+sleep 2
+
+echo
+echo `date`
+echo starting run in current directory $PWD
+echo
+#unset FORT_BUFFERED
+time mpirun -n ${MPI_PROCESS}  ${SOLVER_EXE}
+
+echo "finished successfully"
+echo `date`
+

specfem3d/job_script/job_occigen_test_case_B.slurm

+#!/bin/bash
+#SBATCH -J Large_case_B
+#SBATCH --nodes=384
+#SBATCH --ntasks-per-node=4
+#SBATCH --cpus-per-task=6
+#SBATCH --time=00:29:59
+#SBATCH --mem=110GB
+#SBATCH --output specfem_large_NPROC_XI_16_NEX_XI_384_6omp_10min_%j.output 
+#SBATCH -C HSW24
+set -e
+
+source ./env/env_occigen
+cd $install_dir/specfem3d_globe
+
+export I_MPI_DOMAIN=auto
+export I_MPI_PIN_RESPECT_CPUSET=0
+export I_MPI_DEBUG=4
+
+#Make sure that OMP_NUM_THREADS / KMP_HW_SUBSET = cpus-per-task
+export KMP_HW_SUBSET=2T
+export OMP_NUM_THREADS=12
+
+ulimit -s unlimited
+
+MESHER_EXE=./bin/xmeshfem3D
+SOLVER_EXE=./bin/xspecfem3D
+
+# backup files used for this simulation
+cp DATA/Par_file OUTPUT_FILES/
+cp DATA/STATIONS OUTPUT_FILES/
+cp DATA/CMTSOLUTION OUTPUT_FILES/
+
+##
+## mesh generation
+##
+sleep 2
+
+echo
+echo `date`
+echo "starting MPI mesher"
+echo
+
+MPI_PROCESS=` echo "$SLURM_NNODES*$SLURM_NTASKS_PER_NODE" | bc -l` 
+echo "$SLURM_NNODES*$SLURM_CPUS_PER_TASK"
+echo "SLURM_NTASKS_PER_NODE = " $SLURM_NTASKS_PER_NODE
+echo "SLURM_CPUS_PER_TASKS = " $SLURM_CPUS_PER_TASK
+echo "SLURM_NNODES=" $SLURM_NNODES
+echo "MPI_PROCESS $MPI_PROCESS"
+
+time mpirun -n ${MPI_PROCESS} ${MESHER_EXE}
+echo "  mesher done: `date`"
+echo
+
+##
+## forward simulation
+##
+sleep 2
+
+echo
+echo `date`
+echo starting run in current directory $PWD
+echo
+#unset FORT_BUFFERED
+time mpirun -n ${MPI_PROCESS}  ${SOLVER_EXE}
+
+echo "finished successfully"
+echo `date`
+