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Commit c40c1d63 authored by Valeriu Codreanu's avatar Valeriu Codreanu
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README fixed

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......@@ -45,10 +45,10 @@ The Alya System is a Computational Mechanics code capable of solving different p
- Web site: https://www.bsc.es/computer-applications/alya-system
- Code download: http://www.prace-ri.eu/UEABS/ALYA/1.1/alya3226.tar.gz
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/alya/ALYA_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/alya/ALYA_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/ALYA/1.1/ALYA_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/ALYA/1.1/ALYA_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/alya/ALYA_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/alya/ALYA_Run_README.txt
# Code_Saturne <a name="saturne"></a>
......@@ -62,7 +62,7 @@ Code_Saturne&#174; is based on a co-located finite volume approach that can hand
- Build instructions: http://code-saturne.org/cms/documentation/guides/installation
- Test Case A: http://www.prace-ri.eu/UEABS/Code_Saturne/Code_Saturne_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/Code_Saturne/1.1/Code_Saturne_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/code_saturne/Code_Saturne_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/code_saturne/Code_Saturne_README.txt
# CP2K <a name="cp2k"></a>
......@@ -72,10 +72,10 @@ CP2K provides state-of-the-art methods for efficient and accurate atomistic simu
- Web site: https://www.cp2k.org/
- Code download: https://www.cp2k.org/download
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/cp2k/CP2K_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/cp2k/CP2K_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/CP2K/CP2K_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/CP2K/CP2K_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/cp2k/CP2K_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/cp2k/CP2K_Run_README.txt
# GADGET <a name="gadget"></a>
......@@ -84,9 +84,9 @@ GADGET is a freely available code for cosmological N-body/SPH simulations on mas
- Web site: http://www.mpa-garching.mpg.de/gadget/
- Code download: http://www.prace-ri.eu/UEABS/GADGET/gadget3_Source.tar.gz
- Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license.
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/gadget/gadget3_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/gadget/gadget3_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/GADGET/gadget3_TestCaseA.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/gadget/gadget3_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/gadget/gadget3_Run_README.txt
# GENE <a name="gene"></a>
......@@ -101,7 +101,7 @@ The GENE code is written in Fortran 90 and C and is parallelized with pure MPI.
- Build instructions: included with code download
- Test Case A: included with code download
- Test Case B: included with code download
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/gene/GENE_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/gene/GENE_Run_README.txt
# GPAW <a name="gpaw"></a>
......@@ -116,9 +116,9 @@ The program offers several parallelization levels. The most basic parallelizatio
- Web site: https://wiki.fysik.dtu.dk/gpaw/
- Code download: https://gitlab.com/gpaw/gpaw
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/gpaw/GPAW_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/gpaw/GPAW_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/GPAW/1.2/GPAW_benchmark.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/gpaw/GPAW_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/gpaw/GPAW_Run_README.txt
# GROMACS <a name="gromacs"></a>
......@@ -147,10 +147,10 @@ Instructions:
- Web site: http://www.gromacs.org/
- Code download: http://www.gromacs.org/Downloads The UEABS benchmark cases require the use of 5.1.x or newer branch: the latest 2016 version is suggested.
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/gromacs/GROMACS_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/gromacs/GROMACS_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/GROMACS/1.2/GROMACS_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/GROMACS/1.2/GROMACS_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/gromacs/GROMACS_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/gromacs/GROMACS_Run_README.txt
# NAMD <a name="namd"></a>
......@@ -165,11 +165,11 @@ Deployment areas of NAMD include pharmaceutical research by academic and industr
NAMD is written in C++ and parallelised using Charm++ parallel objects, which are implemented on top of MPI.
- Web site: http://www.ks.uiuc.edu/Research/namd/
- Code download: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/namd/NAMD_Download_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/namd/NAMD_Build_README.txt
- Code download: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/namd/NAMD_Download_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/namd/NAMD_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/NAMD/1.2/NAMD_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/NAMD/1.2/NAMD_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/namd/NAMD_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/namd/NAMD_Run_README.txt
# NEMO <a name="nemo"></a>
......@@ -189,9 +189,9 @@ NEMO is used by a large community: 240 projects in 27 countries (14 in Europe, 1
- Current UEABS 1.2 instructions for NEMO version 3.6 can be found at: https://github.com/jlento/nemo. Since NEMO version 3.4 is still widely spread, superseded UEABS 1.1 instructions are kept for reference
- Code download: http://www.prace-ri.eu/UEABS/NEMO/NEMO_Source.tar.gz
- Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license.
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/nemo/README.md
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/nemo/README.md
- Test Case A: http://www.prace-ri.eu/UEABS/NEMO/NEMO_TestCaseA.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/nemo/README.md
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/nemo/README.md
# QCD <a name="qcd"></a>
......@@ -210,9 +210,9 @@ Kernel D consists of the core matrix-vector multiplication routine for standard
Kernel E consists of a full conjugate gradient solution using Wilson fermions. Lattice size is 643 x 3.
- Code download: http://www.prace-ri.eu/UEABS/QCD/QCD_Source_TestCaseA.tar.gz
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/qcd/QCD_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/qcd/QCD_Build_README.txt
- Test Case A: included with source download
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/qcd/QCD_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/qcd/QCD_Run_README.txt
# Quantum Espresso <a name="espresso"></a>
......@@ -226,7 +226,7 @@ QUANTUM ESPRESSO is written mostly in Fortran90, and parallelised using MPI and
- Build instructions: http://www.quantum-espresso.org/wp-content/uploads/Doc/user_guide/
- Test Case A: http://www.prace-ri.eu/UEABS/Quantum_Espresso/QuantumEspresso_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/Quantum_Espresso/QuantumEspresso_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/quantum_espresso/QuantumEspresso_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/quantum_espresso/QuantumEspresso_Run_README.txt
# SPECFEM3D <a name="specfem3d"></a>
......@@ -241,4 +241,4 @@ In many geological models in the context of seismic wave propagation studies (ex
- Build instructions: http://www.geodynamics.org/wsvn/cig/seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf?op=file&rev=0&sc=0
- Test Case A: http://www.prace-ri.eu/UEABS/SPECFEM3D/SPECFEM3D_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/SPECFEM3D/SPECFEM3D_TestCaseA.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.2/specfem3d/SPECFEM3D_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.2/specfem3d/SPECFEM3D_Run_README.txt
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