Add Marenostrum env and script

specfem3d/env/env_marenostrum

+#!/bin/bash
+module purge
+module load intel/2017.4 impi/2017.4 mkl/2017.4 bsc/1.0
+
+export machine=marenostrum
+export software=specfem3d_globe
+export version=31octobre
+
+#export install_dir=/gpfs/scratch/pr1eih00/pr1eih01/benchmarks/$machine/$software/$version
+export install_dir=/gpfs/projects/pr1eih00/pr1eih01/benchmarks/$machine/$software/$version
+export CC="mpiicc"
+export FC="mpiifort"
+export MPIFC=$FC
+export FCFLAGS=" -g -O3 -qopenmp -xCORE-AVX512 -mtune=skylake -DUSE_FP32 -DOPT_STREAMS -fp-model fast=2 -traceback -mcmodel=large"
+export CFLAGS=" -g -O3  -xCORE-AVX512 -mtune=skylake"

specfem3d/job_script/job_marenostrum_test_case_A.slurm

+#!/bin/bash -l
+#SBATCH --job-name=specfem3D_test_case_A
+#SBATCH --time=01:00:00
+#SBATCH --nodes=24
+#SBATCH --ntasks-per-node=4
+#SBATCH --ntasks-per-core=1
+#SBATCH --cpus-per-task=12
+#SBATCH --output=specfem3D_test_case_A_marenostrum-%j.output
+#SBATCH --constraint=highmem
+#SBATCH --acctg-freq=task=1
+set -e
+
+source ../env/env_marenostrum
+cd $install_dir/TestCaseA/specfem3d_globe
+
+export I_MPI_DOMAIN=auto
+export I_MPI_PIN_RESPECT_CPUSET=0
+export I_MPI_DEBUG=4
+
+#Make sure that OMP_NUM_THREADS / KMP_HW_SUBSET = cpus-per-task
+export KMP_HW_SUBSET=1T
+export OMP_NUM_THREADS=12
+export KMP_AFFINITY=compact,verbose
+
+ulimit -s unlimited
+
+MESHER_EXE=./bin/xmeshfem3D
+SOLVER_EXE=./bin/xspecfem3D
+
+# backup files used for this simulation
+cp DATA/Par_file OUTPUT_FILES/
+cp DATA/STATIONS OUTPUT_FILES/
+cp DATA/CMTSOLUTION OUTPUT_FILES/
+
+##
+## mesh generation
+##
+sleep 2
+
+echo
+echo `date`
+echo "starting MPI mesher"
+echo
+
+MPI_PROCESS=` echo "$SLURM_NNODES*$SLURM_NTASKS_PER_NODE" | bc -l`
+echo "SLURM_NTASKS_PER_NODE = " $SLURM_NTASKS_PER_NODE
+echo "SLURM_CPUS_PER_TASKS = " $SLURM_CPUS_PER_TASK
+echo "SLURM_NNODES=" $SLURM_NNODES
+echo "MPI_PROCESS $MPI_PROCESS"
+echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
+
+time srun -n ${MPI_PROCESS} ${MESHER_EXE}
+echo "  mesher done: `date`"
+echo
+
+##
+## forward simulation
+##
+sleep 2
+
+echo
+echo `date`
+echo starting run in current directory $PWD
+echo
+time srun -n ${MPI_PROCESS}  ${SOLVER_EXE}
+
+echo "finished successfully"
+echo `date`
+

specfem3d/job_script/job_marenostrum_test_case_B.slurm

+#!/bin/bash -l
+#SBATCH --job-name=specfem3D_test_case_B
+#SBATCH --time=00:30:00
+#SBATCH --nodes=384
+#SBATCH --ntasks-per-node=4
+#SBATCH --ntasks-per-core=1
+#SBATCH --cpus-per-task=12
+#SBATCH --output=specfem3D_test_case_B_marenostrum-1536MPI_12OMP-%j.output
+##SBATCH --constraint=highmem
+
+set -e
+
+source ../env/env_marenostrum
+cd $install_dir/TestCaseB/specfem3d_globe
+
+export I_MPI_DOMAIN=auto
+export I_MPI_PIN_RESPECT_CPUSET=0
+export I_MPI_DEBUG=4
+
+#Make sure that OMP_NUM_THREADS / KMP_HW_SUBSET = cpus-per-task
+export KMP_HW_SUBSET=1T
+export OMP_NUM_THREADS=12
+export KMP_AFFINITY=compact,verbose
+
+ulimit -s unlimited
+
+MESHER_EXE=./bin/xmeshfem3D
+SOLVER_EXE=./bin/xspecfem3D
+
+# backup files used for this simulation
+cp DATA/Par_file OUTPUT_FILES/
+cp DATA/STATIONS OUTPUT_FILES/
+cp DATA/CMTSOLUTION OUTPUT_FILES/
+
+##
+## mesh generation
+##
+sleep 2
+
+echo
+echo `date`
+echo "starting MPI mesher"
+echo
+
+MPI_PROCESS=` echo "$SLURM_NNODES*$SLURM_NTASKS_PER_NODE" | bc -l`
+echo "SLURM_NTASKS_PER_NODE = " $SLURM_NTASKS_PER_NODE
+echo "SLURM_CPUS_PER_TASKS = " $SLURM_CPUS_PER_TASK
+echo "SLURM_NNODES=" $SLURM_NNODES
+echo "MPI_PROCESS $MPI_PROCESS"
+echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
+
+time srun -n ${MPI_PROCESS} ${MESHER_EXE}
+echo "  mesher done: `date`"
+echo
+
+##
+## forward simulation
+##
+sleep 2
+
+echo
+echo `date`
+echo starting run in current directory $PWD
+echo
+time srun -n ${MPI_PROCESS}  ${SOLVER_EXE}
+
+echo "finished successfully"
+echo `date`
+