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Commit 52358efa authored by Valeriu Codreanu's avatar Valeriu Codreanu
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README fixed

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......@@ -56,10 +56,10 @@ The Alya System is a Computational Mechanics code capable of solving different p
- Web site: https://www.bsc.es/computer-applications/alya-system
- Code download: http://www.prace-ri.eu/UEABS/ALYA/1.1/alya3226.tar.gz
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/alya/ALYA_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/alya/ALYA_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/ALYA/1.3/ALYA_TestCaseA.tar.bz2
- Test Case B: http://www.prace-ri.eu/UEABS/ALYA/1.3/ALYA_TestCaseB.tar.bz2
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/alya/ALYA_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/alya/ALYA_Run_README.txt
# Code_Saturne <a name="saturne"></a>
......@@ -70,10 +70,10 @@ Code_Saturne&#174; is based on a co-located finite volume approach that can hand
- Web site: http://code-saturne.org
- Code download: http://code-saturne.org/cms/download or http://www.prace-ri.eu/UEABS/Code_Saturne/1.3/Code_Saturne-4.0.6_UEABS.tar.gz
- Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license.
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf
- Test Case A: http://www.prace-ri.eu/UEABS/Code_Saturne/1.3/Code_Saturne_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/Code_Saturne/1.3/Code_Saturne_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/code_saturne/Code_Saturne_Build_Run_4.0.6.pdf
# CP2K <a name="cp2k"></a>
......@@ -83,10 +83,10 @@ CP2K provides state-of-the-art methods for efficient and accurate atomistic simu
- Web site: https://www.cp2k.org/
- Code download: https://www.cp2k.org/download
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/cp2k/CP2K_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/cp2k/CP2K_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/CP2K/1.3/CP2K_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/CP2K/1.3/CP2K_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/cp2k/CP2K_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/cp2k/CP2K_Run_README.txt
# GADGET <a name="gadget"></a>
......@@ -95,9 +95,9 @@ GADGET is a freely available code for cosmological N-body/SPH simulations on mas
- Web site: http://www.mpa-garching.mpg.de/gadget/
- Code download: http://www.prace-ri.eu/UEABS/GADGET/gadget3_Source.tar.gz
- Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license.
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gadget/gadget3_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gadget/gadget3_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/GADGET/gadget3_TestCaseA.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gadget/gadget3_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gadget/gadget3_Run_README.txt
# GENE <a name="gene"></a>
......@@ -112,7 +112,7 @@ The GENE code is written in Fortran 90 and C and is parallelized with pure MPI.
- Build instructions: included with code download
- Test Case A: included with code download
- Test Case B: included with code download
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gene/GENE_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gene/GENE_Run_README.txt
# GPAW <a name="gpaw"></a>
......@@ -127,9 +127,9 @@ The program offers several parallelization levels. The most basic parallelizatio
- Web site: https://wiki.fysik.dtu.dk/gpaw/
- Code download: https://gitlab.com/gpaw/gpaw
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gpaw/GPAW_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gpaw/GPAW_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/GPAW/GPAW_benchmark.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gpaw/GPAW_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gpaw/GPAW_Run_README.txt
# GROMACS <a name="gromacs"></a>
......@@ -160,7 +160,7 @@ Instructions:
- Code download: http://www.gromacs.org/Downloads The UEABS benchmark cases require the use of 5.1.x or newer branch: the latest 2016 version is suggested.
- Test Case A: http://www.prace-ri.eu/UEABS/GROMACS/1.2/GROMACS_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/GROMACS/1.2/GROMACS_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/gromacs/GROMACS_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/gromacs/GROMACS_Run_README.txt
# NAMD <a name="namd"></a>
......@@ -175,11 +175,11 @@ Deployment areas of NAMD include pharmaceutical research by academic and industr
NAMD is written in C++ and parallelised using Charm++ parallel objects, which are implemented on top of MPI.
- Web site: http://www.ks.uiuc.edu/Research/namd/
- Code download: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/namd/NAMD_Download_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/namd/NAMD_Build_README.txt
- Code download: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/namd/NAMD_Download_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/namd/NAMD_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/NAMD/1.2/NAMD_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/NAMD/1.2/NAMD_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/namd/NAMD_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/namd/NAMD_Run_README.txt
# NEMO <a name="nemo"></a>
......@@ -198,9 +198,9 @@ NEMO is used by a large community: 240 projects in 27 countries (14 in Europe, 1
- Web site: http://www.nemo-ocean.eu/
- Code download: http://www.prace-ri.eu/UEABS/NEMO/NEMO_Source.tar.gz
- Disclaimer: please note that by downloading the code from this website, you agree to be bound by the terms of the GPL license.
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/nemo/NEMO_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/nemo/NEMO_Build_README.txt
- Test Case A: http://www.prace-ri.eu/UEABS/NEMO/NEMO_TestCaseA.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/nemo/NEMO_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/nemo/NEMO_Run_README.txt
# QCD <a name="qcd"></a>
......@@ -219,9 +219,9 @@ Kernel D consists of the core matrix-vector multiplication routine for standard
Kernel E consists of a full conjugate gradient solution using Wilson fermions. Lattice size is 643 x 3.
- Code download: http://www.prace-ri.eu/UEABS/QCD/1.3/QCD_Source_TestCaseA.tar.gz
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/qcd/QCD_Build_README.txt
- Build instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/qcd/QCD_Build_README.txt
- Test Case A: included with source download
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/qcd/QCD_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/qcd/QCD_Run_README.txt
# Quantum Espresso <a name="espresso"></a>
......@@ -235,7 +235,7 @@ QUANTUM ESPRESSO is written mostly in Fortran90, and parallelised using MPI and
- Build instructions: http://www.quantum-espresso.org/wp-content/uploads/Doc/user_guide/
- Test Case A: http://www.prace-ri.eu/UEABS/Quantum_Espresso/QuantumEspresso_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/Quantum_Espresso/QuantumEspresso_TestCaseB.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/quantum_espresso/QE-guide.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/quantum_espresso/QE-guide.txt
# SPECFEM3D <a name="specfem3d"></a>
......@@ -250,4 +250,4 @@ In many geological models in the context of seismic wave propagation studies (ex
- Build instructions: http://www.geodynamics.org/wsvn/cig/seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf?op=file&rev=0&sc=0
- Test Case A: http://www.prace-ri.eu/UEABS/SPECFEM3D/SPECFEM3D_TestCaseA.tar.gz
- Test Case B: http://www.prace-ri.eu/UEABS/SPECFEM3D/SPECFEM3D_TestCaseA.tar.gz
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/v1.3/specfem3d/SPECFEM3D_Run_README.txt
- Run instructions: https://repository.prace-ri.eu/git/UEABS/ueabs/blob/r1.3/specfem3d/SPECFEM3D_Run_README.txt
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