MPI-OpenMP.c

#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <sys/time.h>
#include <mpi.h>
#include "/users/guest/petyros/Training/External_Functions/matrix_op.h"
#include "/users/guest/petyros/Training/External_Functions/util.h"
#include "/users/guest/petyros/Training/External_Functions/input.h"

int main(int argc, char ** argv) {
    int rank,size;
    int global_nm[2],local_nm[2]; //global matrix dimensions and local matrix dimensions (2D-domain, 2D-subdomain)
    int global_padded_nm[2];   //padded global matrix dimensions (if padding is not needed, global_padded=global)
    int i,j,k, sparse=0, *cooCol, n_z, *I;
    double * M, * A, * x, * y, *local_y, * cooVal, comm_t, comp_t;
    
	
    MPI_Init(&argc,&argv);
    MPI_Comm_size(MPI_COMM_WORLD,&size);
    MPI_Comm_rank(MPI_COMM_WORLD,&rank);
	
	if (argc < 2) error("Too few Arguments");
	else if ( argc == 2) /* ./Program Input_File -> File Input to COO */
	{
		if(!mtx_read(&I, &cooCol, &cooVal, &global_nm[0], &global_nm[1], &n_z, argv[1])) error("input and/or COO convertion failed");
		sparse = 1;
	}
	else if ( argc == 3) { /*./Program N M -> Generate random NxM matrix */
        global_nm[0]=atoi(argv[1]);
        global_nm[1]=atoi(argv[2]);	
	}
	else error("Too many Arguments");

	/* Padd N if needed */
   	local_nm[1]=global_nm[1];
	global_padded_nm[1]=global_nm[1];

	if (global_nm[0]%size==0) {
		local_nm[0]=global_nm[0]/size;
		global_padded_nm[0]=global_nm[0];
	}
	else {
		local_nm[0]=(global_nm[0]/size)+1;
		global_padded_nm[0]=local_nm[0]*size;
	}

	x =	(double *) malloc(global_padded_nm[1] * sizeof(*x));
    if (rank==0) {
		M = (double *) malloc(global_padded_nm[0] * global_padded_nm[1] * sizeof(*M));
		vec_init_rand(x, global_padded_nm[1], 1.0);
		y = (double *) malloc(global_padded_nm[0] * sizeof(*y));
		vec_init(y, global_padded_nm[0], 0.0);
		if( !y || !x || !M ) error("memory allocation failed");
		
		/* Initialize matrices */
		if (sparse) {
		; //regenerate_matrix_coo(M, I, cooCol, cooVal, n, m, n_z); /* Sparse matrices read from .mtx format */
		}
		else ser_matrix_init_rand_p(M, global_nm[0], global_nm[1], global_padded_nm[1] * (global_padded_nm[0] - global_nm[0]), 1.0); /* Normal matrices generated randomly */
	}

	
	local_y = (double *) malloc(local_nm[0] * sizeof(*local_y));
	vec_init(local_y, local_nm[0], 0.0);

	//if(rank==0) printf("Local[0]=%d Local[1]=%d global_padded[0]=%d global_padded[1]=%d\n",local[0],local[1],global_padded[0],global_padded[1]);

	A = (double *) malloc(local_nm[0] * local_nm[1] * sizeof(*A));

	#pragma omp parallel for schedule(static) /* Initialize data for each thread in corresponding socket with first-touch policy */
	for( i=0 ; i<local_nm[0] ; ++i){
		for ( j=0 ; j< local_nm[1] ; ++j) A[i*local_nm[1]+j]=0.0;	
		//printf( "Initialize data Thread=%d i=%d\n", omp_get_thread_num(), i);
	}

    /* Rank 0 scatters the global matrix */
	double * gsendbuf;
	if (rank == 0){
		gsendbuf = &(M[0]);
		comm_t= MPI_Wtime(); 
	}

	MPI_Scatter(gsendbuf, local_nm[1] * local_nm[0], MPI_DOUBLE, A, local_nm[1] * local_nm[0], MPI_DOUBLE, 0, MPI_COMM_WORLD);
	//if (rank == 0) printf("Scatter complete\n");
	MPI_Bcast(x, global_padded_nm[1], MPI_DOUBLE, 0, MPI_COMM_WORLD);
	
	if (rank==0) {
		printf("MPI Version(N=%d, M=%d, Tasks=%d, Nodes=%s, Tasks/Node=%s, threads=%s): ", global_nm[0],  global_nm[1], size, 
		getenv("SLURM_JOB_NUM_NODES"), getenv("SLURM_NTASKS_PER_NODE"), getenv("OMP_NUM_THREADS"));
		comp_t= MPI_Wtime(); 
	}
	for (i = 0; i < NR_ITER; ++i){
		register double	yi = 0;
		#pragma omp parallel for private(j,yi) shared(local_nm,A,local_y) schedule(static)
		for (k = 0; k < local_nm[0]; ++k) {
			//printf( "Compute Thread=%d i=%d\n", omp_get_thread_num(), k);
        	yi = 0.0;
        	for (j = 0; j < local_nm[1]; ++j) yi += A[k*local_nm[1]+j]*x[j];
        	local_y[k] = yi;
    	}
	}

	MPI_Barrier(MPI_COMM_WORLD);
	if (rank==0) comp_t= MPI_Wtime() - comp_t;
	MPI_Gather(local_y, local_nm[0], MPI_DOUBLE, y, local_nm[0], MPI_DOUBLE, 0, MPI_COMM_WORLD);
	if (rank==0) comm_t = MPI_Wtime() - comm_t - comp_t;

#ifdef _DEBUG_
	/* Output y vector to a file for debugging */
	if (rank == 0) {
        FILE * fp;
		char * filename = "/users/guest/petyros/Training/Outputs/Debug/MPI-OpenMP.out" ;
		if(( fp = fopen( filename, "w")) == NULL)  error("Output file creation failed\n");
        for (k = 0; k < global_nm[0]; ++k) fprintf(fp, "%lf ", y[k]) ;
		fclose(fp) ;
#endif
		report_mpi_results(comm_t, comp_t);
		free(M);
		free(y);
	}
	free(x);
	free(local_y);
	free(A);

    MPI_Finalize();
    return 0;
}